View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_high_20 (Length: 222)
Name: NF8506_high_20
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18948401 - 18948622
Alignment:
| Q |
1 |
gagcaatacattatatcattagttccatgtgagaaggaaaagggtggaagtgcagtagggttcatgactatttataaacagaaatgaagaaacttagtta |
100 |
Q |
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| T |
18948401 |
gagcaatacattatatcattagttccatgtgagaaggaaaagggtggaagtggagtagggttgatgactatttataaacagaaatgaagaaacttagtta |
18948500 |
T |
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| Q |
101 |
ttaagatttttgaagtataaagtcgaatttcgttgcaagtttaagaaatgtgtgttttatgcacctaaaattatagtaattgtgtcttctattgattttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |
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| T |
18948501 |
ttaagatttttgaagtataaagtcgaatttcgttgcaagtttaagaaatgtgtgttttatgcaactaaatttatagtaattgcgtcttctattgattttt |
18948600 |
T |
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| Q |
201 |
cgaaaatatatagtgtcctact |
222 |
Q |
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| T |
18948601 |
ctaaaatatatagtgtcctact |
18948622 |
T |
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