View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_high_3 (Length: 446)
Name: NF8506_high_3
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 8839834 - 8840242
Alignment:
| Q |
19 |
catcaaatggaggaagagaagaaggaaggaaatgcagaaaccattgaggctgtgaagtctcctcctatctgtgagaaggtttcagaagacattgatcatt |
118 |
Q |
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| T |
8839834 |
catcaaatggaggaagagaacaaggaaggaaatgcagaaaccattgaggctgtgaagtctccccctatctgtgagaaggtttcagaagacattgatcatt |
8839933 |
T |
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| Q |
119 |
ttcttcttcatgagaaagaaggagtgtcgtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactgg |
218 |
Q |
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| T |
8839934 |
ttcttctgcatgagaaagaaggagtgtcgtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaactgg |
8840033 |
T |
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| Q |
219 |
agaacggaaaggaaaatgggaagagattatggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattcat |
318 |
Q |
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| T |
8840034 |
agaacggaaaggaaaatgggaagagattatggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattcat |
8840133 |
T |
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| Q |
319 |
gatgaaaaagaaaccatagatgaaagaagaaagtcaatagccaatcgtgttggtaaaattcaacagaaagcgatggcgtttttggaagaagattttcgcg |
418 |
Q |
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| T |
8840134 |
gatgaaaaagaaaccatagatgaaagaagaaagtcaatagccaatcgtgttggtacaattcaacagaaagcgatggcgtttttggaagaagattttcgcg |
8840233 |
T |
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| Q |
419 |
tgttgatag |
427 |
Q |
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| T |
8840234 |
tgttgatag |
8840242 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 10627094 - 10627062
Alignment:
| Q |
91 |
gagaaggtttcagaagacattgatcattttctt |
123 |
Q |
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| T |
10627094 |
gagaaggtttcagaagacattgatcaatttctt |
10627062 |
T |
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