View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_high_4 (Length: 433)
Name: NF8506_high_4
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 36201813 - 36202230
Alignment:
| Q |
16 |
catcaggaactcgtgatttttccaatatccgttcgttatattgtggtcttgacggtgatgattatgagaaagagatccaaaaggaactgagatggctcaa |
115 |
Q |
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| T |
36201813 |
catcaggaactcgtgatttttccaatatccgttcgttatattgtggtcttgacggtgatggttatgagaaagagatccaaaaggaactgagatggctcaa |
36201912 |
T |
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| Q |
116 |
agcaagatacctaatggagttaagggaacttaaggatcaacaactcgggataacagataaatcttctcgtggcggtaacggagaacacaaaatagattac |
215 |
Q |
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| T |
36201913 |
agcaagatacctaatggagttaaggggacttaaggatcaacaactcgggataacagataaatcttctcgtggcggtaacggagaacacaaaatagattat |
36202012 |
T |
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| Q |
216 |
gccattatgttaccttcgttgacagaaacattcaaaggagccgacagtgtgattcgcttgcaacctgtcattaataactggagctctgatttgagcagcc |
315 |
Q |
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| T |
36202013 |
gccattatgttaccttcgttgacagaaacattcaaaggagccgacagtgtgattcgcttgcaatctgtcattaataactggagctctgatttgagcagcc |
36202112 |
T |
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| Q |
316 |
gtccttgtgttcataaaagcagccccgattcagacgccaaaatggccgaaaattgtgaggcgatgggatcccccggagaaggtatgatggttactgcaaa |
415 |
Q |
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| T |
36202113 |
gtccttgtgttcataaaagcagccccgattcagacgccaaaatggccgaaaattgtgaggcgatgggatcccccggagaaggtatgatggttactgcaaa |
36202212 |
T |
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| Q |
416 |
gagtttttacagtggctc |
433 |
Q |
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| T |
36202213 |
gagtttttacagtggctc |
36202230 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 47352407 - 47352323
Alignment:
| Q |
73 |
atgattatgagaaagagatccaaaaggaactgagatggctcaaagcaagatacctaatggagttaagggaacttaaggatcaaca |
157 |
Q |
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| T |
47352407 |
atgattacgagaaagagatccaacatgagttgagatggctgaaagcaaaatatcaaatggaattgtgggaacttaaggataaaca |
47352323 |
T |
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