View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_high_5 (Length: 405)
Name: NF8506_high_5
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 49466552 - 49466179
Alignment:
| Q |
18 |
cagaaatgtggagtatctaaagatttaattgatgcctaaaactgaa--taatcttcaatattgataatgtcagtcctttcaacgcaagtattttatccat |
115 |
Q |
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| T |
49466552 |
cagaaatgtggagtatctaaagatttaattgatgcctaaaactgaaaataatcttcaatattgataatgtcagtcctttcaacgcaagtattttatccat |
49466453 |
T |
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| Q |
116 |
tatacaagattcagatttattcattggttgattttgctggaaactgtgtgaaaactaacagcattcttattttagaaattaatcccctgagctagatgta |
215 |
Q |
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| T |
49466452 |
tatacaagattcagatttattcattggttgattttgctggaaactgtgtgaaaactaacagcattcttattttagaaattaatcccctgagctagatgta |
49466353 |
T |
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| Q |
216 |
tacctgtgttgtcatcaatttcaaaagttccagcatcatggaaaaccaaacgaagcacacctgcagcctttccctttgtcaataccttcctcaactcttc |
315 |
Q |
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| T |
49466352 |
tacctgtgttgtcatcaatttcaaaagttccagcatcatggaaaaccaaacgaagcacacctgcagcctttccctttgtcaataccttcctcaactcttc |
49466253 |
T |
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| Q |
316 |
tttaatcagaagatattcttttgtacctggtcttcataatgggtaaaagcaggacacaaacagtacaccaaaca |
389 |
Q |
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| T |
49466252 |
tttaatcagaagatattcttttgtacctggtcttcataatgggtaaaagcaggacacaaacagtacaccaaaca |
49466179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 97 - 289
Target Start/End: Complemental strand, 52087961 - 52087769
Alignment:
| Q |
97 |
acgcaagtattttatccattatacaagattcagatttattcattggttgattttgctggaaactgtgtgaaaactaacagcattcttattttagaaatta |
196 |
Q |
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| T |
52087961 |
acgcaagtattttatccattatacaagattccgatttattcattggttgattttgctggaaactgtgtgaaaactaacagcattcttattttagaaatta |
52087862 |
T |
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| Q |
197 |
atcccctgagctagatgtatacctgtgttgtcatcaatttcaaaagttccagcatcatggaaaaccaaacgaagcacacctgcagcctttccc |
289 |
Q |
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| T |
52087861 |
atcccctgagctagatgtatacctctattgtcatcaatttcaaaagttccagcatcatggaaaaccaaacgaagcacacctgcagcctttccc |
52087769 |
T |
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