View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_1 (Length: 970)
Name: NF8506_low_1
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 415 - 842
Target Start/End: Complemental strand, 27701740 - 27701313
Alignment:
| Q |
415 |
catgtcttctatgcactgaagacagtagcattttagatgagaatgatcttggtggtccaattgaagatgaaactgagcaatttgatgagccaaatgagta |
514 |
Q |
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| T |
27701740 |
catgtcttctatgcactgaagacagtagcattttagatgagaatgatcttggtggttcaatggaagatgaaactgagcaatttgatgagccaattgagta |
27701641 |
T |
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| Q |
515 |
tgtgccaccaccattgctgccacctccattgctgagtgaggagaatttgaaggttttgattgaaaaagaatgtcatcacttgcctgctagtgattatgtc |
614 |
Q |
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| T |
27701640 |
tgtgccaccaccattgttgccacctccattgctgagtgaggagaatttgaaggttttgattgaaaaagaatgtcatcacttgcctgctagtgattatgtc |
27701541 |
T |
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| Q |
615 |
aataggctgaaaaatggttaattggatttgcagggcaggatggaatccattgattggatggaaaaggtggggtccacatttatttgattcttaatttctc |
714 |
Q |
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| T |
27701540 |
aataggctgaaaaatggagaattggatttgcagggcaggatggaatccattgattggatggaaaaggtggggtccacatttatttgattcttaatttctc |
27701441 |
T |
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| Q |
715 |
attaatttttagggtttcaactatatgtgagttcattttctcttttgctagttccaatgttatgtacattgtttttctttaatctcnnnnnnnattgaca |
814 |
Q |
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| T |
27701440 |
attaatttttagggtttcaactatatgtgagttcattttctcttttgctagttccaatgttatgtgcattgtttttctttaatctctttttttattgaaa |
27701341 |
T |
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| Q |
815 |
attaatattctttaatcttggcatgtga |
842 |
Q |
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| T |
27701340 |
attaatattctttaatcttggcatgtga |
27701313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 27702100 - 27701978
Alignment:
| Q |
47 |
ttcatttgtttcttctccataagaccctctcctacagaaaatcttaagagaagtcttagaagcaagggaagggacacacactcataaaatttatctataa |
146 |
Q |
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| T |
27702100 |
ttcatttgtttcttctccataagaccctctcctacagaaaatcttaagagaagtcttagaagcaagggaagggacacatactcataaaatttatctataa |
27702001 |
T |
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| Q |
147 |
atatagtgagagaggtttacaat |
169 |
Q |
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| T |
27702000 |
atatagtgagagaggtttacaat |
27701978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 27701932 - 27701877
Alignment:
| Q |
219 |
atgaacagcttgaaactatagagtgattttgttcttatttcacaaaggttctttgt |
274 |
Q |
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| T |
27701932 |
atgaacagcttgaaactatagagtgattttgttcttatttcacaaaggttctttgt |
27701877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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