View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_11 (Length: 394)
Name: NF8506_low_11
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 46555158 - 46555386
Alignment:
| Q |
24 |
tatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaaaacaaaccatcgacaggaaattcaagactgcataatacaca |
123 |
Q |
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| T |
46555158 |
tatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaaaacaaaccatcgacaggaaattcaagactgcataatacaca |
46555257 |
T |
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| Q |
124 |
atctccgagtcgcagaatactatcaaattcaaatttgatcatttgtctggtcttcaatttagcatcccggttcgatttaaactcagtggaatacaagcat |
223 |
Q |
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| T |
46555258 |
atctccgagtcgcagaatgctatcaaattcaaatttgatcatttatctggtcttcaatttagcatcccggttcgatttaaactcagtggaatacaagcat |
46555357 |
T |
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| Q |
224 |
attagtttaccttgtggaaatgcttatag |
252 |
Q |
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| T |
46555358 |
attagtttaccttgtggaaatgctcatag |
46555386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 46555419 - 46555503
Alignment:
| Q |
256 |
ttggtatatgtactaattcgggatgatggtgtttattcatgagacttttcacataatctttataaattggcatggccatgagtat |
340 |
Q |
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| T |
46555419 |
ttggtatatgtactaattcgggatgatggtgtttattcatgagacttttcacataatctttataaattggcatggccatgagtat |
46555503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 46559277 - 46559319
Alignment:
| Q |
340 |
taaaatactaaaagatagtatttgaagtaaatcgccctagtat |
382 |
Q |
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| T |
46559277 |
taaaatactaaaagatagtatttgaagtaaatcgccctagtat |
46559319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 10822207 - 10822256
Alignment:
| Q |
118 |
tacacaatctccgagtcgcagaatactatcaaattcaaatttgatcattt |
167 |
Q |
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| T |
10822207 |
tacaccatctccgagtcgtagaatattatcaaatttaaatttgatcattt |
10822256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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