View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_12 (Length: 375)
Name: NF8506_low_12
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 23597776 - 23598140
Alignment:
| Q |
1 |
accctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccc |
100 |
Q |
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| T |
23597776 |
accctatcattgcaaggatgtatcaaggtgctggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccc |
23597875 |
T |
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| Q |
101 |
caaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597876 |
caaaattgaggaagttgattaagcggaacttttgtaatgggatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatg |
23597975 |
T |
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| Q |
201 |
tatgtgttttggtttaagtagtacagcgagctctatcttatttcaatgtacttttccc----tttaatgttaacaatggtttatgttcctgttcttcatt |
296 |
Q |
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| T |
23597976 |
tatgtgttttggtttagctagtacagcgagctctgtcttatttcaatgtacttttccctttatttaatgttaacaatggtttaagttcctgttcttcatt |
23598075 |
T |
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| Q |
297 |
tttcttgttttgacttttgataaattgatcatggattcaaattcgtg-tttatctttctaagttg |
360 |
Q |
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| T |
23598076 |
tttcttgttttgacttttgataaattgatcatggattcaaattcgtgttttatctttctaagttg |
23598140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23588924 - 23589087
Alignment:
| Q |
1 |
accctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||| |
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| T |
23588924 |
accctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccc |
23589023 |
T |
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| Q |
101 |
caaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggatttt |
164 |
Q |
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|||||||||||||||||||||||| |||||| | |||| ||| ||| |||||||| |||||| |
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| T |
23589024 |
caaaattgaggaagttgattaagctaaactttgttcatgggattgatgggtggttcatgatttt |
23589087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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