View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_13 (Length: 373)
Name: NF8506_low_13
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 21189367 - 21189026
Alignment:
| Q |
18 |
aattacagtgtcaattgttttcactagagnnnnnnncttctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaata |
117 |
Q |
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| T |
21189367 |
aattacagtgtcaattgttttcactagagtttttttcttctccgtttctctttttcatttcataaaatttaacaagttcaaagttctaaagaatagaata |
21189268 |
T |
|
| Q |
118 |
tagcaattatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaagaagtaacaccttgtagcaaaggaataaaacacccttctata |
217 |
Q |
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|| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21189267 |
taacaattagcagcatcaagacatataaataaaacaactagaaacatgagcaaatgaagaagtaacaccttgtagcaaaggaataaaacacccttctata |
21189168 |
T |
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| Q |
218 |
catgtgagctaagtatattgttccaacccaatgttttagattatgctgtccatttcggtgcattgattttctagatctttatgagnnnnnnnnttaaatt |
317 |
Q |
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| T |
21189167 |
catgtgagctaagtatattgttccaacccaatgttttagattttgctgtccatttcggtgcattgattttctagatctttatgagaaaaaaaattaaatt |
21189068 |
T |
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| Q |
318 |
tttatatgtttgggatttcgaaaatcaatttgctagtataat |
359 |
Q |
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| T |
21189067 |
tttatatgtttgggatttcgaaaatcaatttgctagaataat |
21189026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 21205387 - 21205253
Alignment:
| Q |
55 |
ttctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaataaaacag |
154 |
Q |
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| T |
21205387 |
ttctcagtttctctttctcttttcacaaaatttaacaagttcaaagttctaaagaatagaatatagaaattgtcagcatcaagacatataaataaaacaa |
21205288 |
T |
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| Q |
155 |
ctagaaacatgagcaaaggaagaagtaacaccttg |
189 |
Q |
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| T |
21205287 |
ccagaaacatgagcaaaggaagaagtaaaaccttg |
21205253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 21203585 - 21203504
Alignment:
| Q |
56 |
tctcagtttctctttttcgtttcataaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaag |
137 |
Q |
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| T |
21203585 |
tctcagtttttctttctcttttcacaaaattgaacaagttcaaagttgtaaataatagaatatagcaattctcagcaccaag |
21203504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 21155478 - 21155434
Alignment:
| Q |
145 |
aataaaacagctagaaacatgagcaaaggaagaagtaacaccttg |
189 |
Q |
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| T |
21155478 |
aataaaacaaccagaaacatgagcaaaggaagaagtaacaccttg |
21155434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 21217235 - 21217184
Alignment:
| Q |
81 |
aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagca |
132 |
Q |
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|||||||||||||||||||||||||| |||||| ||||| |||| |||||| |
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| T |
21217235 |
aaaatttaacaagttcaaagttctaaagaatagcatatacaaattttcagca |
21217184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 21155374 - 21155328
Alignment:
| Q |
200 |
ataaaacacccttctatacatgtgagctaagtatattgttccaaccc |
246 |
Q |
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|||||||| |||||||||||||||| | |||||||| |||||||||| |
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| T |
21155374 |
ataaaacaaccttctatacatgtgaacgaagtatatggttccaaccc |
21155328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 21221699 - 21221634
Alignment:
| Q |
81 |
aaaatttaacaagttcaaagttctaatgaatagaatatagcaattatcagcatcaagacatataaa |
146 |
Q |
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|||||| ||||||||||||||| ||| |||||| ||||| |||| |||| ||||||| ||||||| |
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| T |
21221699 |
aaaattgaacaagttcaaagttgtaaagaatagcatatacaaattctcagtatcaagatatataaa |
21221634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 21645884 - 21645951
Alignment:
| Q |
109 |
aatagaatatagcaattatcagcatcaagacatataaataaaacagctagaaacatgagcaaaggaagaa |
178 |
Q |
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|||||||||||||||||||||||| |||| | ||||||| |||| || ||||||||||||||||||||| |
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| T |
21645884 |
aatagaatatagcaattatcagcaccaag--agataaatagaacaacttgaaacatgagcaaaggaagaa |
21645951 |
T |
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