View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_15 (Length: 316)
Name: NF8506_low_15
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_15 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 16977740 - 16978045
Alignment:
| Q |
11 |
cagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaactacgtctcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16977740 |
cagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaactacgtctcac |
16977839 |
T |
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| Q |
111 |
caattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgttacatcgaaggatcctccgtggattggaccggg |
210 |
Q |
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| T |
16977840 |
caattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgttacatcgaaggatcctccgtggattggaccggg |
16977939 |
T |
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| Q |
211 |
catacattatctgaatgtggtaccaacattaaatcgttgaaaattgaaggttgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16977940 |
catacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcccaactatgcatattcccctatgcggatgctacagtttccttgtaa |
16978039 |
T |
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| Q |
311 |
aattgg |
316 |
Q |
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|||||| |
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| T |
16978040 |
aattgg |
16978045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 17029612 - 17029917
Alignment:
| Q |
11 |
cagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaactacgtctcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17029612 |
cagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaactacgtctcac |
17029711 |
T |
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| Q |
111 |
caattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgttacatcgaaggatcctccgtggattggaccggg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
17029712 |
caattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgctacatcgaaggatcctccgtggattggatcagg |
17029811 |
T |
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| Q |
211 |
catacattatctgaatgtggtaccaacattaaatcgttgaaaattgaaggttgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaa |
310 |
Q |
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| T |
17029812 |
catacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaa |
17029911 |
T |
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| Q |
311 |
aattgg |
316 |
Q |
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|||||| |
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| T |
17029912 |
aattgg |
17029917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 17047950 - 17048255
Alignment:
| Q |
11 |
cagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaactacgtctcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17047950 |
cagagacacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaactacgtctcac |
17048049 |
T |
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| Q |
111 |
caattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgttacatcgaaggatcctccgtggattggaccggg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
17048050 |
caattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgctacatcgaaggatcctccgtggattggatcagg |
17048149 |
T |
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| Q |
211 |
catacattatctgaatgtggtaccaacattaaatcgttgaaaattgaaggttgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17048150 |
catacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaa |
17048249 |
T |
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| Q |
311 |
aattgg |
316 |
Q |
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|||||| |
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| T |
17048250 |
aattgg |
17048255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 17109078 - 17109377
Alignment:
| Q |
17 |
cacttgaatgtttagtgagtctgaaaatttgtgattgcaaacagctcgtgacttctgttccattctctccatcaatcagtgaactacgtctcaccaattg |
116 |
Q |
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|||||||||||||||||| | ||||||| ||||| || ||||| || || ||||||||||| ||||| |||||||||| ||||||| | |||||| |
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| T |
17109078 |
cacttgaatgtttagtgaatttgaaaatctgtgactgtaaacaacttgttgattctgttccatcttctccgaaaatcagtgaattacgtctaatcaattg |
17109177 |
T |
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| Q |
117 |
tggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgttacatcgaaggatcctccgtggattggaccgggcataca |
216 |
Q |
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||| ||||| ||||||||||| || | || ||||||| |||||| | || ||| ||||| | | | ||||||||||||| ||| || |||| | | |
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| T |
17109178 |
cggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcttgggaggatcctccgtgcatttgatcgggagtgcc |
17109277 |
T |
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| Q |
217 |
ttatctgaatgtggtaccaacattaaatcgttgaaaattgaaggttgcgcaactatgcatattcccctatgcggatgctacaatttccttgtaaaattgg |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| || ||||| |||| ||||| ||| || ||||||||||||||||||||||| |
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| T |
17109278 |
ttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctggtcactacaatttccttgtaaaattgg |
17109377 |
T |
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