View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8506_low_17 (Length: 300)

Name: NF8506_low_17
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8506_low_17
NF8506_low_17
[»] chr5 (3 HSPs)
chr5 (18-291)||(25110406-25110679)
chr5 (18-291)||(25169498-25169771)
chr5 (80-252)||(33852247-33852419)
[»] chr6 (1 HSPs)
chr6 (123-291)||(4790412-4790580)
[»] scaffold0196 (1 HSPs)
scaffold0196 (74-254)||(31491-31671)
[»] chr4 (1 HSPs)
chr4 (74-254)||(10988173-10988353)
[»] chr1 (1 HSPs)
chr1 (64-290)||(21355025-21355251)
[»] scaffold0001 (1 HSPs)
scaffold0001 (74-254)||(198655-198835)
[»] chr8 (4 HSPs)
chr8 (74-254)||(21407501-21407681)
chr8 (74-254)||(21801993-21802173)
chr8 (76-254)||(27916395-27916573)
chr8 (76-254)||(27962814-27962992)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 25110679 - 25110406
Alignment:
Q  18 aattttgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccat 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  25110679 aattttgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagccttccat 25110580  T
Q  118 aaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatg 217  Q
    ||||||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25110579 aaaccatctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaataatttgtttctcatttgctcgcatatcttccgcgaaggaaatg 25110480  T
Q  218 tttgtgctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 291  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25110479 tttgtgctgatggccttgctgctttgggacatgatgttcaagacacggtttggttcacgttgttgccttcatct 25110406  T

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Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 25169771 - 25169498
Alignment:
Q  18 aattttgggcctccttctggccatagaatatgcggtcatcaacaggtggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccat 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  25169771 aattttgggcctcctactggccatagaatatgcggtcatcaacatgtggtctcatttatggcttgaaagtgattctattagtgcggttcaagccttccat 25169672  T
Q  118 aaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatg 217  Q
    ||||||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25169671 aaaccatctcttattcctatttgtcttcggaagaggtggcataattgctctcaaaataatttgtttctcatttgctcgcatatcttccgcgaaggaaatg 25169572  T
Q  218 tttgtgctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 291  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25169571 tttgtgctgatggccttgctgctttgggacatgatgttcaagacacggtttggttcacgttgttgccttcatct 25169498  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 252
Target Start/End: Complemental strand, 33852419 - 33852247
Alignment:
Q  80 ttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaattt 179  Q
    |||||| |||||||  | |||| ||||| || ||||||||||||||||||||||||||| ||||||| |||  |||||| || ||| |||| | |   ||    
T  33852419 ttgaaagtgattcttcttgtgcagttcaagctttccataaaccatctcttattcctatttgtcttcggaacgagtggcacaactgcactcataatggctt 33852320  T
Q  180 gtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgat 252  Q
    |||| | ||||| || || |||||||| ||||| ||||||||| |||| | |||||  |||||||| ||||||    
T  33852319 gtttatgatttgttctcacatcttccgagaagggaatgtttgtactgacgaccttgtagctttgggacatgat 33852247  T

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Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 123 - 291
Target Start/End: Complemental strand, 4790580 - 4790412
Alignment:
Q  123 atctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 222  Q
    ||||||||||||||||| |||||| |||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4790580 atctcttattcctattcttcttcggaacaggtggcataactgttctcaaaaaaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgt 4790481  T
Q  223 gctgatggccttgctgctttgggtcatgatgttcacgacacggtttggttcacgttgttgccttcatct 291  Q
    | ||||||| |||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  4790480 gttgatggcgttgcagctttgggacatgatattcaagacacggtttggttcacgttgttgccttcatct 4790412  T

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Target: scaffold0196 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 31671 - 31491
Alignment:
Q  74 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 173  Q
    |||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  31671 tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa 31572  T
Q  174 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 254  Q
       | | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  31571 gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 31491  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 10988353 - 10988173
Alignment:
Q  74 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 173  Q
    |||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  10988353 tatggcttgaaagtgattcttctagtgcggttcaagctttccataaaccatctcttattccggttagtcttcgcaaccgttggcataattgtactcacaa 10988254  T
Q  174 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 254  Q
       | | ||| | |||||||| || |||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  10988253 gggtctctttattatttgctcccacatcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 10988173  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 64 - 290
Target Start/End: Original strand, 21355025 - 21355251
Alignment:
Q  64 tggtctcatgtatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataatt 163  Q
    ||||||||| ||||||||||||  || |||  |||||||||||| || |||||||||||||||||||||||| || ||||||| ||| | || || || |    
T  21355025 tggtctcatttatggcttgaaagcgactcttctagtgcggttcaggctttccataaaccatctcttattcctgtttgtcttcggaaccgatgacacaact 21355124  T
Q  164 gctctcaaactaatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgttcacgacac 263  Q
    |  | || | |||| ||||||||||||| || ||||| |||||  |||||||||| |||||| |||| ||||| ||  |||| |  ||| |||| | |||    
T  21355125 gtacacataataatctgtttctcatttgttctcatatattccggaaaggaaatgtctgtgcttatggacttgcagccatggggcgcgatattcaaggcac 21355224  T
Q  264 ggtttggttcacgttgttgccttcatc 290  Q
    ||| |||||||| ||||||||| ||||    
T  21355225 ggtctggttcactttgttgcctccatc 21355251  T

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Target: scaffold0001 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 198835 - 198655
Alignment:
Q  74 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 173  Q
    |||||||||||| |||||||  ||||||||| || || |||||| ||||||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  198835 tatggcttgaaagtgattcttctagtgcggtacaagctttccatcaaccatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 198736  T
Q  174 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 254  Q
    |  | | ||| | |||||||| || |||||||| ||||| ||| || | || |||||||| || |||||||| ||||||||    
T  198735 tggtctctttattatttgctcccacatcttccgagaaggcaatattagcgcggatggcctcgccgctttgggacatgatgt 198655  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 21407681 - 21407501
Alignment:
Q  74 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 173  Q
    |||||||||||| |||||||  ||||||||| || || |||||||||| ||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  21407681 tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 21407582  T
Q  174 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 254  Q
    |  | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| ||  ||||||| ||||||||    
T  21407581 tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt 21407501  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 21802173 - 21801993
Alignment:
Q  74 tatggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaac 173  Q
    |||||||||||| |||||||  ||||||||| || || |||||||||| ||||||||||||  || ||||||||||| | |||||||||||  |||| |     
T  21802173 tatggcttgaaagtgattcttctagtgcggtacaagctttccataaacaatctcttattccggttggtcttcgcaaccgttggcataattgtactcacaa 21802074  T
Q  174 taatttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 254  Q
    |  | | ||| | |||||||| || |||||| | ||||| |||||||| || |||||||| ||  ||||||| ||||||||    
T  21802073 tggtctctttattatttgctcccacatcttcagagaagggaatgtttgcgcggatggcctcgccactttgggacatgatgt 21801993  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 27916395 - 27916573
Alignment:
Q  76 tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta 175  Q
    ||||||||||  ||||||  ||||||||| || || ||||||||||||||||||||||   || ||||||||||| | |||||||||||  |||| | |     
T  27916395 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattcaggttggtcttcgcaaccgttggcataattgtactcacaatg 27916494  T
Q  176 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 254  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  27916495 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 27916573  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 27962814 - 27962992
Alignment:
Q  76 tggcttgaaactgattctattagtgcggttcacgccttccataaaccatctcttattcctattcgtcttcgcaacaggtggcataattgctctcaaacta 175  Q
    ||||||||||  ||||||  ||||||||| || || ||||||||||||||||||||||   || ||||||||||| | |||||||||||  |||| | |     
T  27962814 tggcttgaaagcgattcttctagtgcggtacaagctttccataaaccatctcttattctggttggtcttcgcaaccgttggcataattgtactcacaatg 27962913  T
Q  176 atttgtttctcatttgctcgcatatcttccgcgaaggaaatgtttgtgctgatggccttgctgctttgggtcatgatgt 254  Q
     | | ||| | |||||||  ||  ||||||| ||||| |||||||| || |||||||| || |||||||| ||||||||    
T  27962914 gtctctttattatttgcttccacgtcttccgagaaggcaatgtttgcgcggatggcctcgccgctttgggacatgatgt 27962992  T

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