View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_2 (Length: 586)
Name: NF8506_low_2
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 11 - 575
Target Start/End: Complemental strand, 50047991 - 50047427
Alignment:
| Q |
11 |
gacatcagggtcagctactcagtaacaagagtctgtaaactgttatgcgtaagtaataaattaaagcttctctaaggactaagatagatccaaataagat |
110 |
Q |
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| T |
50047991 |
gacatcagggtcagctactcagtaacaagagtctgtaaactgttatgcgtaagtaataaattaaagcttctctaaggactaagatagatccaaataagat |
50047892 |
T |
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| Q |
111 |
ataaccatcaaattgtctaatttaggttcttaattttgagcttcacttttgttggtttatcataggttacgctatttgcagtgcacttcacaggctgcgt |
210 |
Q |
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| T |
50047891 |
ataaccatcaaattgtctaatttaggttcttaattttgagcttcacttttgttggtttatcataggttacgctatttgcagtgcacttcacaggctgcgt |
50047792 |
T |
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| Q |
211 |
gtatttttggttggctttccatcacaaatcacccggaaacacgtggattgggaagcaggtagaggattttaagcataggagtgtcggatcgggttacact |
310 |
Q |
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| T |
50047791 |
gtatttttggttggctttccatcacaaatcacccggaaacacgtggattgggaagcaggtagaggattttaagcataggagtgtcggatcgggttacact |
50047692 |
T |
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| Q |
311 |
tactccatgtattggtctattgtaacccttaccactgttggctatggagatttacatgcagaaaatacaacggagaaggttttcaatattttttatatgc |
410 |
Q |
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| T |
50047691 |
tactccatgtattggtctattgtaacccttaccactgttggctatggagatttacatgcagaaaatacaacggagaaggttttcaatattttttatatgc |
50047592 |
T |
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| Q |
411 |
tgtttaacatcggactcactgcatatattatcggaaacatgacaaatctggtggttcatagctctgtccgaacctttgctatggtaaattttatgaagat |
510 |
Q |
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| T |
50047591 |
tgtttaacatcggactcactgcatatattatcggaaacatgacaaatctggtggttcatagctctgtccgaacctttgctatggtaaattttatgaagat |
50047492 |
T |
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| Q |
511 |
ttttcatggtagtttaacccttgacttagcattgaattctataacactaacatcaacatagtttt |
575 |
Q |
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| T |
50047491 |
ttttcatggtagtttaacccttgacttagcattgaattctataacactaacatcaacatagtttt |
50047427 |
T |
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