View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_24 (Length: 238)
Name: NF8506_low_24
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 4373702 - 4373909
Alignment:
| Q |
18 |
attatcgccgctacttaacaacactgatttagtcttgtctaggctacaatgatattgcttgaattgaaatgcattgttcaacactctctttacgaaaccg |
117 |
Q |
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| T |
4373702 |
attatagccgctacttaacaacactgatttagtcttgtctaggctacagtgatattgcttgaattgaaatgcattgttcatcactctctttacgaaaccg |
4373801 |
T |
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| Q |
118 |
gtctactacatttgagtttccatttacgcttcatcctgcttgtaatcgtatgttgttccataaactggttgttcttccttcacgttaggaacccggaagc |
217 |
Q |
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| T |
4373802 |
gtctactacatttgagtttccatttacgcttcatcatgcttgtaatcgtatgttgttccataaactggtttttcttccttcacgttaggaactcggaagc |
4373901 |
T |
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| Q |
218 |
tagaatta |
225 |
Q |
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|||||||| |
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| T |
4373902 |
tagaatta |
4373909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 4382049 - 4382230
Alignment:
| Q |
18 |
attatcgccgctacttaacaacactgatttagtcttgtctaggctacaatgatattgcttgaattgaaatgcattgttcaacactctctttacgaaaccg |
117 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
4382049 |
attatagccactacttaacaacactgatttagtcttgtctaggctacagtgatattgcttgaatt----------------------ctttacgaaaccg |
4382126 |
T |
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| Q |
118 |
gtctactacatttgagtttccatttacgcttcatcctgcttgtaatcgtatgttgttccataaactggttgttcttccttcacgttaggaacccggaagc |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||| |
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| T |
4382127 |
gtctactgtatttgagtttccatttacgcttcatcctgcttgtaatcgtatgttgttccataaaccggtcgttcttccttcacgttaggatctaggaagc |
4382226 |
T |
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