View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_29 (Length: 208)
Name: NF8506_low_29
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 36057440 - 36057267
Alignment:
| Q |
19 |
agtatagaaaatatatgagcaatatataaaataatattaaatgtaagtcgtagaaagaagtgtgtaataatttatcttgaagcgtatagaatactatctt |
118 |
Q |
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| T |
36057440 |
agtatagaaaatatatgagcaatatataaaataatattaaatgttagtcgtagaaagaagtgtgtataaatttatcctgaagcatatagaatactatctt |
36057341 |
T |
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| Q |
119 |
gatgtatgcataactgtctctttgagcctataaaaatgggataggttgtcatttctaacccaagcaagtaaaag |
192 |
Q |
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| T |
36057340 |
gatgtgtgcataactctctttttaggcctataaaaatgggagaggttttcatttctaacccaagcaagtaaaag |
36057267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 36058568 - 36058395
Alignment:
| Q |
19 |
agtatagaaaatatatgagcaatatataaaataatattaaatgtaagtcgtagaaagaagtgtgtaataatttatcttgaagcgtatagaatactatctt |
118 |
Q |
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| T |
36058568 |
agtatagaaaatatatgagcaatatataaaataatattaaatgttagtcgtagaaagaagtgtgtataaatttatcctgaagcatatagaatactatctt |
36058469 |
T |
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| Q |
119 |
gatgtatgcataactgtctctttgagcctataaaaatgggataggttgtcatttctaacccaagcaagtaaaag |
192 |
Q |
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| T |
36058468 |
gatgtgtgcataactctctttttaggcctataaaaatgggagaggttttcatttctaacccaagcaagtaaaag |
36058395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 36059471 - 36059298
Alignment:
| Q |
19 |
agtatagaaaatatatgagcaatatataaaataatattaaatgtaagtcgtagaaagaagtgtgtaataatttatcttgaagcgtatagaatactatctt |
118 |
Q |
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| T |
36059471 |
agtatagaaaatatatgagcaatatataaaataatattaaatgttagtcgtagaaagaagtgtgtataaatttatcctgaagcatatagaatactatctt |
36059372 |
T |
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| Q |
119 |
gatgtatgcataactgtctctttgagcctataaaaatgggataggttgtcatttctaacccaagcaagtaaaag |
192 |
Q |
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||||| ||||||||| ||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
36059371 |
gatgtgtgcataactctctttttaggcctataaaaatgggagaggttttcatttctaacccaagcaagtaaaag |
36059298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 36057180 - 36057042
Alignment:
| Q |
55 |
ttaaatgtaagtcgtagaaagaagtgtgtaataatttatcttgaagcgtatagaatactatcttgatgtatgcataactgtctctttgagcctataaaaa |
154 |
Q |
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| T |
36057180 |
ttaaatgtaagtcgtacaaagaagtgtgtaataatttatcttgaagcgtatagaatactatcttgatttatgcataactgtctctttgaacctataaaaa |
36057081 |
T |
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| Q |
155 |
tgggataggttgtcatttctaacccaagcaagtaaaagg |
193 |
Q |
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| T |
36057080 |
taggttaggttgtcatttctaacccaagcaggtaaaagg |
36057042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 36058308 - 36058170
Alignment:
| Q |
55 |
ttaaatgtaagtcgtagaaagaagtgtgtaataatttatcttgaagcgtatagaatactatcttgatgtatgcataactgtctctttgagcctataaaaa |
154 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
36058308 |
ttaaatgtaagtcgtacaaagaagtgtgtaataatttatcttgaagcgtatagaatactatcttgatttatgcataactgtctctttgatcctataaaaa |
36058209 |
T |
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| Q |
155 |
tgggataggttgtcatttctaacccaagcaagtaaaagg |
193 |
Q |
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| T |
36058208 |
ttggttaggttgtcatttctaacccaagcaggtaaaagg |
36058170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 12074256 - 12074312
Alignment:
| Q |
130 |
aactgtctctttgagcctataaaaatgggataggttgtcatttctaacccaagcaag |
186 |
Q |
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|||| |||||| ||||||||||||||||| || ||||||||| ||| ||||||||| |
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| T |
12074256 |
aactctctcttgaagcctataaaaatgggagagcttgtcatttgtaaaccaagcaag |
12074312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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