View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_3 (Length: 469)
Name: NF8506_low_3
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 28028711 - 28028393
Alignment:
| Q |
1 |
cgtcaccaactttctttgacaatatcgccaaactcgagcttaaca--attcatgcattctcatacttgaaattacgatgagctccaactctaattattat |
98 |
Q |
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| T |
28028711 |
cgtcaccaactttctttgacaatatcgccaaactcgagcttaacacaattcatgcattctcatacttgaaattacgatgagctctaactctgattattat |
28028612 |
T |
|
| Q |
99 |
ttcaagattcaacaatataggatagtgatcagatgcaagtgttactaaattttccaattgtgcatttgggaacacatcataccacctgttgttcgcaagc |
198 |
Q |
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| T |
28028611 |
ttcaagattcaacaatataggatagtgatcagatgcaagtgttactaaattttccaattgtgcatttgggaacacatcatgccacctgtcgttcgcaagc |
28028512 |
T |
|
| Q |
199 |
gccccgatctgagcgttcttcaattgctctggaagtgtcaatactcataaaccatgtg-----tattggtaaccaatcatgggaaaatttgttaatacag |
293 |
Q |
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| T |
28028511 |
gccccgatccgaacgttcttcaattgctctggaagtgtcaatactcataaaccatgtgtattatattggtaaccaatgatgggaaaatttgctaatacag |
28028412 |
T |
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| Q |
294 |
aatctgacattgcttggca |
312 |
Q |
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| T |
28028411 |
aatctgacattgcttggca |
28028393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 4696832 - 4696734
Alignment:
| Q |
99 |
ttcaagattcaacaatataggatagtgatcagatgcaagtgttactaaattttccaattgtgcatttgggaacacatcataccacctgttgttcgcaag |
197 |
Q |
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|||||||||||| || ||| ||||||||| ||||| ||| | ||| ||| |||||||||||||||||||||| || ||| ||||| ||||||||||| |
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| T |
4696832 |
ttcaagattcaataagataagatagtgataagatgtaagagctaccaaaatttccaattgtgcatttgggaagaccgcatgccaccctttgttcgcaag |
4696734 |
T |
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