View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_5 (Length: 459)
Name: NF8506_low_5
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 31 - 441
Target Start/End: Complemental strand, 45745722 - 45745314
Alignment:
| Q |
31 |
aattgccatcaatgtttgtgtaggtttgtttagtatatcgttttaattgattattattttcttgaatagaatcgatacgcagatatgtttcagtctatga |
130 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745722 |
aattaccatcaatgtttgtgtaggtttgtttagtatatcgttttaattgattattattttcttgaatagaatcgatacgcagatatgtttcagtctatga |
45745623 |
T |
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| Q |
131 |
ttgctagatctgccaaccttgatgttttatctggtggaatcggtggaaccagaaatggtgctatacatttggtatgnnnnnnnnnnnctgttgctgtata |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
45745622 |
ttgctagatctgccaaccttgatgttttatctggtggaatcggtggaaccagaaatggtgctatacatttggtacgttttttttt--ctgttgctgtata |
45745525 |
T |
|
| Q |
231 |
taagtttgcttcaatgtgctttggtttgctggagcttactaggattatgcaatttcagatgcataccgaggttcaattgctctcaccactagtcccggtt |
330 |
Q |
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| T |
45745524 |
taagtttgcttcaatgtgccttggtttgctggagcttactaggattatgcaatttcagatgcataccgaggttcaattgctctcaccactagtcccggtt |
45745425 |
T |
|
| Q |
331 |
cgtcaagtgagaatccttcggttctgtaagcagcatgcagaaggtgtatgggcagtggttgatgtttctgttgagattggtcatgatccttctaatgcac |
430 |
Q |
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| T |
45745424 |
cgtcaagtgagaatccttcggttctgtaagcagcatgcagaaggtgtatgggcagtggttgatgtttctgttgagattggtcatgatccttctaatgcac |
45745325 |
T |
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| Q |
431 |
aaccattcata |
441 |
Q |
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| T |
45745324 |
aaccattcata |
45745314 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 28597512 - 28597475
Alignment:
| Q |
358 |
aagcagcatgcagaaggtgtatgggcagtggttgatgt |
395 |
Q |
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| T |
28597512 |
aagcaacatgcagaaggggtatgggcagtggttgatgt |
28597475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 12325668 - 12325620
Alignment:
| Q |
344 |
tccttcggttctgtaagcagcatgcagaaggtgtatgggcagtggttga |
392 |
Q |
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| T |
12325668 |
tccttaggttttgcaagcagcatgcagaaggtgtttgggctgtggttga |
12325620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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