View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8506_low_8 (Length: 432)
Name: NF8506_low_8
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 8787224 - 8786971
Alignment:
| Q |
8 |
attattctgcaatcttcacttacatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcaccgcagttgtccttgaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8787224 |
attattctgcaatcttcacttacatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcatcgcagttgtccttgaag |
8787125 |
T |
|
| Q |
108 |
cactaacagcacgattatgcttcaaaatatcattcctggcctcccgtcttcttaatagcctttgtaacctttttgttttatcatcagcatgagagccgtc |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
8787124 |
cactaacggcacgattatgcttcaaaatatcattcctggcctcccgtcttcttaatagccttcgtaacctttttgttttatcatcagcatgagagccatc |
8787025 |
T |
|
| Q |
208 |
cgggttaaacatgatcaaagcacgctccatttttcctttaatgggaacaaaatc |
261 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8787024 |
cgggttaaacatgatgaaagcacgctcgatttttcctttaatgggaacaaaatc |
8786971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 58 - 256
Target Start/End: Complemental strand, 8781476 - 8781278
Alignment:
| Q |
58 |
atctattaagacattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgcttcaaaatatcattcctggcctcccgtctt |
157 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
8781476 |
atctattaaaacattcgtatttccacaaatcatcgcagttgttcttgaagcactaacgacacgattgtgcttcaaactattattcctggccttccgtctt |
8781377 |
T |
|
| Q |
158 |
cttaatagcctttgtaacctttttgttttatcatcagcatgagagccgtccgggttaaacatgatcaaagcacgctccatttttcctttaatgggaaca |
256 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||||| | ||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
8781376 |
cttaatatcctttctaacctttttgttttatcatcagtatgagaatcatccaggttaaacatgattaaagcacgctccatttttcttttaatgggaaca |
8781278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 262 - 405
Target Start/End: Complemental strand, 8786923 - 8786792
Alignment:
| Q |
262 |
aacagcgaaacaatcaattttatcgatataactgatactctatattttaaggaatacatttatctacaaattttaagcactattgactgtattcatacat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8786923 |
aacagcgaaacaatcaattttatcgatacaactgatactctatatcttaaggaatacatttatctacaaattttaagcactcttgactgtattcatac-- |
8786826 |
T |
|
| Q |
362 |
aaacaatcctacgaggtattttcgaaacatatctgaatcatgaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8786825 |
----------acgaggtattttcgaaacatatctgaatcatgaa |
8786792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 8781179 - 8781081
Alignment:
| Q |
308 |
ttaaggaatacatttatctacaaattttaagcact-attgactgtattcatacataaacaatcctacgaggtattttcgaaacatatctgaatcatgaa |
405 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||| |||| || |||| ||||||||||||| |
|
|
| T |
8781179 |
ttaaggaatatatttatctacaaatttaaagcactcatttattgtattcatacatacacaatcctacgagatattatcctaacaagtctgaatcatgaa |
8781081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 8781670 - 8781550
Alignment:
| Q |
68 |
acattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgcttcaaaatatcattcctggcctcccgtcttcttaatagcc |
167 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||| |||||||||||| |||| || |||||||| ||||| | |||||||| |||||||| |||||| |
|
|
| T |
8781670 |
acatttgtatttgcacaaatcatcgcagttgttcttgaagcactagtgacacgtttgcgcttcaaactatcacttctggcctcttgtcttcttgatagcc |
8781571 |
T |
|
| Q |
168 |
tttgtaacctttttgttttat |
188 |
Q |
| |
|
||| ||||| |||| |||||| |
|
|
| T |
8781570 |
tttttaacccttttcttttat |
8781550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 8764560 - 8764421
Alignment:
| Q |
17 |
caatcttcacttacatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcaccgcagttgtccttgaagcactaacag |
116 |
Q |
| |
|
||||||||| || ||||||||||||| ||| |||| ||| |||||||| | | |||||| |||||||| |||||| |||| ||| |||||| || |
|
|
| T |
8764560 |
caatcttcatttgtatcatcatctatcgtatgatcactttcgtctattaaaattgtggtattttcacaaatctccgcaggtgtctttgtggcactagcaa |
8764461 |
T |
|
| Q |
117 |
cacgattatgcttcaaaatatcattcctggcctcccgtct |
156 |
Q |
| |
|
|| |||| ||||||||| |||||||| | || |||||||| |
|
|
| T |
8764460 |
catgattgtgcttcaaactatcattcatcgcttcccgtct |
8764421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University