View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8506_low_9 (Length: 406)
Name: NF8506_low_9
Description: NF8506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8506_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 2606764 - 2607147
Alignment:
| Q |
1 |
tgaacaacttgctcaataatatattttttccgtgctgaacttgatccttttacgtcaatatatatcaatatcatcataagcagaaagttgtttaattaga |
100 |
Q |
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| T |
2606764 |
tgaacaacttgctcaataatatattttttccgtgctgaacttgatccttttacgtcaatatacatca------tcataagcagaaagttgtttaattaga |
2606857 |
T |
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| Q |
101 |
atatnnnnnnn-gtcttatagataagagggcgatacaaacaatactacagaattgaagtgaaggaaatttggcatcacaagagttaagagaatcgaaaga |
199 |
Q |
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| T |
2606858 |
atataaaaaaaagtcttatagataagagggcgatacaaacaatactagagaattgaagtgaaggaaatttggcatcacaagagttaagagaatcgaaaga |
2606957 |
T |
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| Q |
200 |
tgggtagcaaaagccaagataataatgatagagatttagtaaagaaggttttcactcacaaaggtcgatacgtgcaatacagtttgtatggaaacttgtt |
299 |
Q |
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| T |
2606958 |
tgggtagcaaaagccaagataataatgatagagatttagtaaagaaggttttcactcacaaaggtcgatacgtgcaatacagtttgtatggaaacttgtt |
2607057 |
T |
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| Q |
300 |
tgaagtgtcctccaaatatgttcctccccttcgccctatcggtagaggtgcttatggaatcgtctggttagtttcactttcgcaacttcc |
389 |
Q |
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| T |
2607058 |
tgaagtgtcctccaaatatgttcctcctcttcgccctatcggtagaggtgcttatggaatcgtctggttagtttcactttcgcaacttcc |
2607147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 41338201 - 41338118
Alignment:
| Q |
284 |
tgtatggaaacttgtttgaagtgtcctccaaatatgttcctccccttcgccctatcggtagaggtgcttatggaatcgtctggt |
367 |
Q |
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| T |
41338201 |
tgtatggaaacttgtttgaggtgtcttctaagtatgtgccacccattcgccctattggtagaggcgcttatggtatcgtttggt |
41338118 |
T |
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