View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8507_high_3 (Length: 214)
Name: NF8507_high_3
Description: NF8507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8507_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 33139905 - 33140088
Alignment:
| Q |
16 |
caaaagctcccatctatgatggttccactaaaacactggttagtagtattaatcatatctttatttagtttcattggatttatgtttaagtatgttgtac |
115 |
Q |
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| T |
33139905 |
caaaagctcccatctatgatggttccactaaaacactggttagtagtattagtcatatctttatttagtttcattggatttatgtttaagtatgttgtac |
33140004 |
T |
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| Q |
116 |
aaggctggtttatgtataaatatgttttacaattaaataggttaatatcgaagtgttgaaaaagaaggacgtgttcttgttcat |
199 |
Q |
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| T |
33140005 |
aaggctggtttatgtataaatatgttttataattaaacaggttaatatcgaagtgttgaaaaagaaggacgtgttcttgttcat |
33140088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 33158373 - 33158435
Alignment:
| Q |
137 |
atgttttacaattaaataggttaatatcgaagtgttgaaaaagaaggacgtgttcttgttcat |
199 |
Q |
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| T |
33158373 |
atgttttatatttaaacaggttaatattgatgtgttgaaaaagaaggacgttttcttgttcat |
33158435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 33181216 - 33181278
Alignment:
| Q |
137 |
atgttttacaattaaataggttaatatcgaagtgttgaaaaagaaggacgtgttcttgttcat |
199 |
Q |
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| T |
33181216 |
atgttttatatttaaacaggttaatattgatgtgttgaaaaagaaggacgttttcttgttcat |
33181278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 33288616 - 33288581
Alignment:
| Q |
25 |
ccatctatgatggttccactaaaacactggttagta |
60 |
Q |
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| T |
33288616 |
ccatctatgatggttccaccaaaacactggttagta |
33288581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 33288259 - 33288214
Alignment:
| Q |
154 |
aggttaatatcgaagtgttgaaaaagaaggacgtgttcttgttcat |
199 |
Q |
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||||| |||| ||||||||||||||||| || |||||||||||||| |
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| T |
33288259 |
aggttgatattgaagtgttgaaaaagaaagaagtgttcttgttcat |
33288214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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