View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8507_low_1 (Length: 748)
Name: NF8507_low_1
Description: NF8507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8507_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 650; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 16 - 741
Target Start/End: Complemental strand, 37961361 - 37960636
Alignment:
| Q |
16 |
cctccaacctcatcatccctccaaaatcccataacacccctccttacatacgttaccttgatcaagactctatttccttcactgtagctgaatcctcagc |
115 |
Q |
| |
|
|||| ||||||||| |||||||||| ||||| |||||| |||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
37961361 |
cctctaacctcatcgtccctccaaattcccaaaacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagc |
37961262 |
T |
|
| Q |
116 |
agacttcaacatcctcatatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgc |
215 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961261 |
agacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacactcgc |
37961162 |
T |
|
| Q |
216 |
gtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961161 |
atcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttc |
37961062 |
T |
|
| Q |
316 |
accatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctctcgaatactctctgcctcttgatcttccttcaca |
415 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
37961061 |
accatttcgtgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctcttgaatactctccgcctcttgatcttccttcaca |
37960962 |
T |
|
| Q |
416 |
tgaaagagatagagttaaagatccaaatggtcttaaacctgtatacttgcaagaattagaagattctgaatcaaatgaaatggaatttgcgggtttggtt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960961 |
tgaaagagatagagttaaagatccaaatggtcttaaacttgtatacttgcaagaattagaagattctgaatcaaatgaaatggaatttgcgggtttggtt |
37960862 |
T |
|
| Q |
516 |
cgagattcttatgttaacaagataagaacaactttagtgttgagctatgaacaagtccagaagttaaagaaatgggttactgataaatgtaaagagagtt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960861 |
cgagattcttatgttaacaagataagaacagctttagtgttgagctatgaacaagtccagaagttaaagaaatgggttactgataaatgtaaagagagtt |
37960762 |
T |
|
| Q |
616 |
gtagaatacaacacttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagaggagggtgatagcaaaagtgatgaaggtga |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960761 |
gtagaatacaacacttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagaggagggtgatagcaaaagtgatgaaggtga |
37960662 |
T |
|
| Q |
716 |
ttgtgttgatcttgatgatctctgct |
741 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
37960661 |
ttgtgttgatcttgatgatcactgct |
37960636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 37906704 - 37907073
Alignment:
| Q |
13 |
tcacctccaacctcatcatccctccaaaatcccataacacccctccttacatacgttaccttgatcaagactctatttccttcactgtagctgaatcctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37906704 |
tcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatttccttcactgtagctgaatcctc |
37906803 |
T |
|
| Q |
113 |
agcagacttcaacatcctcatatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacact |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37906804 |
agcagacttcaacatcctcgtatctgattcacaagatgctcaaaactggcaccatctcgttccaaatttacctccacctcgtaccgaacaagacaacatt |
37906903 |
T |
|
| Q |
213 |
cgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatc-- |
310 |
Q |
| |
|
|| || |||||||||||| |||||| |||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
37906904 |
cgtgttatccctataatgtctattccagtcactgttcttccaaactccgggttctctatttgcctcagttacaaccatgttgctgcatacggaaaatcgt |
37907003 |
T |
|
| Q |
311 |
acttcaccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtct |
380 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37907004 |
acttcatcatttcatgaaattttgggcttctctttcaaaagccatagcaaaaaataacaataatttgtct |
37907073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 37914867 - 37915281
Alignment:
| Q |
13 |
tcacctccaacctcatcatccctccaaaatcccataacacccctccttacatacgttaccttgatcaagactctatttccttcactgtagctgaatcctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||| |
|
|
| T |
37914867 |
tcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatctccttcaccatagctgaatcctc |
37914966 |
T |
|
| Q |
113 |
agcagacttcaacatcctcatatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaagacaacact |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| | || |
|
|
| T |
37914967 |
agcagacttcaacatcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaaaatggtaca |
37915066 |
T |
|
| Q |
213 |
cgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcctaagttacaaccatgttgctgcagacggaaaatcac |
312 |
Q |
| |
|
| | | ||| | ||||| |||||| ||||| |||| || ||||| ||||| ||||| || || | || || |||| ||||||||||||||||| |
|
|
| T |
37915067 |
tgtattgttcctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcac |
37915166 |
T |
|
| Q |
313 |
ttcaccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaacaataatttgtctctcgaatactctctgcctcttgatcttccttc |
412 |
Q |
| |
|
|||| |||||||||||||||||||| | | |||| ||||| || || ||||||||| | |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
37915167 |
ttcatcatttcatgaaattttgggcatttgtttccaaagctat---aacaaacaacaacgagttgtctcttgaatactctccgcctcttgatcttccttc |
37915263 |
T |
|
| Q |
413 |
acatgaaagagatagagt |
430 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37915264 |
ccatgaaagagatagagt |
37915281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 626 - 674
Target Start/End: Original strand, 37915477 - 37915525
Alignment:
| Q |
626 |
acacttgtcaacttttgttgtaacaagttccttgatttggttttgtatg |
674 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37915477 |
acacatgtcaacttttgttgtaacatgttccttgatttggttttgtatg |
37915525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 37907310 - 37907369
Alignment:
| Q |
627 |
cacttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagag |
686 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
37907310 |
cacatgtcaacatttgttgtaacatgttccttgatttggttttgtatggtaaaatcagag |
37907369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 630 - 686
Target Start/End: Original strand, 3783596 - 3783652
Alignment:
| Q |
630 |
ttgtcaacttttgttgtaacaagttccttgatttggttttgtatgataaaagcagag |
686 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
3783596 |
ttgtcaacttttgttgtaacatgttccttgatttggttttgtttgataaaatcagag |
3783652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 3783338 - 3783405
Alignment:
| Q |
378 |
tctctcgaatactctctgcctcttgatctt---ccttcacatgaaagagatagagttaaagatccaaa |
442 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
3783338 |
tctctagaacactctctgcctcttgatcttcttccttcacatgaaagagatagagttagagacccaaa |
3783405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University