View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8507_low_2 (Length: 602)
Name: NF8507_low_2
Description: NF8507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8507_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Complemental strand, 34765849 - 34765273
Alignment:
| Q |
19 |
ttcgaagaaaaattgatgatcttaaaaa--tgtgtgtttgagtttcttcgttgaattctttcaaagaaaaatactttagagattaaatctatgcaactac |
116 |
Q |
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| T |
34765849 |
ttcgaagaaaaattgatgatcttaaaaaaatgtgtgtttgagtttcttcgctgaattctttcaaagaaaaatacttgagagattaaatctatgcaactac |
34765750 |
T |
|
| Q |
117 |
actagtcatatatgatttacaccaaaagtattctttttctgtgattttctannnnnnnaagtcttaaatttaaatcttaatttggtgatttattattnnn |
216 |
Q |
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| T |
34765749 |
actagtcatatatgatttacaccaaaagtattctttttctgtgatttcctatttttttaagtcttaaatttaaatcttaatttggtgatttattattaaa |
34765650 |
T |
|
| Q |
217 |
nnnngaagtttcattcgcatattcaaaatgttggtcgtatcatcacttttcccccgacttttattgattattagcttttatgtctgtcaaacgacacatt |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||| |
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| T |
34765649 |
aaaagaagtttcgttcgcatattcaaaatgttggtcgtatcatcacttttcccccgactttcattgattataagcttttatgtctgtcaaacgataaatt |
34765550 |
T |
|
| Q |
317 |
agggttatgatctagcttgtggccagggaaagactaagatagat-ggtcgttgatggtaatgtttattgagtgaaaatttgaagatgttagaaacgtcaa |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34765549 |
agggttatgatctagcttgtggccaaggaaagactaagatagatgggtcgttgatggtaatgtttattgagtgaaaatttgaagatcttagaaacgtcaa |
34765450 |
T |
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| Q |
416 |
tgaaagtta-ggcttctatttgaaaatttagattcggggagtgtatgattgggttgatgtcgaatggaataatattttagttgaaagtgtgtttcgagtt |
514 |
Q |
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||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765449 |
tgaaagttagggcttctacttgaaaatttagattatgggagtgtatgattgggttgatgtcgaatggaataatattttagttgaaagtgtgtttcgagtt |
34765350 |
T |
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| Q |
515 |
tccatggaccactttgggaatattnnnnnnngttagggaaaatagaattttcgttactaagtggtactgatgtccat |
591 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||| |||| |
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| T |
34765349 |
tccatggaccactttgggaatattaaaaaaagttagggaaaatataattttcgttaataagtgatactgatggccat |
34765273 |
T |
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