View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8507_low_3 (Length: 585)

Name: NF8507_low_3
Description: NF8507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8507_low_3
NF8507_low_3
[»] chr8 (2 HSPs)
chr8 (245-573)||(12171101-12171428)
chr8 (245-573)||(12415529-12415856)
[»] chr6 (1 HSPs)
chr6 (7-67)||(19231321-19231381)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 245 - 573
Target Start/End: Original strand, 12171101 - 12171428
Alignment:
Q  245 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 341  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12171101 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12171196  T
Q  342 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 441  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12171197 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12171294  T
Q  442 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 539  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12171295 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12171394  T
Q  540 gttttcactggtgattctttcctatgatgtccat 573  Q
     ||||||||||||||| |||||||||||||||||    
T  12171395 attttcactggtgattatttcctatgatgtccat 12171428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 245 - 573
Target Start/End: Original strand, 12415529 - 12415856
Alignment:
Q  245 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 341  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12415529 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12415624  T
Q  342 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 441  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12415625 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12415722  T
Q  442 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 539  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12415723 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12415822  T
Q  540 gttttcactggtgattctttcctatgatgtccat 573  Q
     ||||||||||||||| |||||||||||||||||    
T  12415823 attttcactggtgattatttcctatgatgtccat 12415856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 19231321 - 19231381
Alignment:
Q  7 tttattaggggccttttttaattttagagccggacctccaatcttgtaggaacggccctgg 67  Q
    ||||||||||||| |||||||| |||||||||  |||||||| || | |||||| ||||||    
T  19231321 tttattaggggccatttttaatattagagccgagcctccaattttattggaacgtccctgg 19231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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