View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8507_low_4 (Length: 515)

Name: NF8507_low_4
Description: NF8507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8507_low_4
NF8507_low_4
[»] chr2 (13 HSPs)
chr2 (97-497)||(35681636-35682036)
chr2 (320-497)||(31635525-31635698)
chr2 (102-328)||(31635882-31636112)
chr2 (113-235)||(22011076-22011198)
chr2 (102-184)||(27952637-27952719)
chr2 (125-213)||(280297-280385)
chr2 (97-167)||(2165636-2165706)
chr2 (106-223)||(33053125-33053241)
chr2 (102-223)||(36648579-36648700)
chr2 (99-223)||(32162225-32162347)
chr2 (141-234)||(18945646-18945739)
chr2 (101-175)||(23457389-23457462)
chr2 (102-178)||(36614845-36614921)
[»] chr7 (8 HSPs)
chr7 (102-497)||(4302838-4303234)
chr7 (106-218)||(11001090-11001202)
chr7 (103-223)||(1217473-1217591)
chr7 (123-214)||(1369529-1369620)
chr7 (106-221)||(8915437-8915551)
chr7 (103-179)||(1786424-1786500)
chr7 (102-223)||(13882995-13883117)
chr7 (97-219)||(11228430-11228551)
[»] chr8 (9 HSPs)
chr8 (222-497)||(37192736-37193008)
chr8 (97-223)||(23573240-23573365)
chr8 (97-167)||(22922157-22922227)
chr8 (102-175)||(26377776-26377849)
chr8 (102-177)||(22512360-22512435)
chr8 (99-241)||(2688855-2688999)
chr8 (102-166)||(2188719-2188783)
chr8 (125-221)||(24577813-24577909)
chr8 (110-153)||(37193064-37193107)
[»] chr5 (5 HSPs)
chr5 (97-235)||(21845197-21845335)
chr5 (106-223)||(18252124-18252241)
chr5 (125-167)||(19677630-19677672)
chr5 (97-131)||(21849278-21849312)
chr5 (97-131)||(21857192-21857226)
[»] chr1 (8 HSPs)
chr1 (98-218)||(10926905-10927026)
chr1 (97-220)||(10927811-10927934)
chr1 (102-218)||(13441901-13442015)
chr1 (97-223)||(23988929-23989055)
chr1 (112-184)||(8966022-8966094)
chr1 (102-224)||(31915240-31915365)
chr1 (101-215)||(40805571-40805685)
chr1 (114-177)||(31522584-31522647)
[»] chr6 (15 HSPs)
chr6 (97-223)||(18203141-18203265)
chr6 (99-223)||(12881729-12881852)
chr6 (102-219)||(22888963-22889080)
chr6 (106-222)||(34374051-34374167)
chr6 (97-167)||(30049629-30049699)
chr6 (97-167)||(30051916-30051986)
chr6 (102-219)||(22873520-22873637)
chr6 (102-219)||(22910506-22910623)
chr6 (100-167)||(3541959-3542026)
chr6 (97-219)||(12778664-12778784)
chr6 (102-147)||(11194398-11194443)
chr6 (123-179)||(8047661-8047717)
chr6 (97-133)||(18726879-18726915)
chr6 (113-177)||(32361109-32361173)
chr6 (128-166)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (97-223)||(22716318-22716444)
chr4 (97-223)||(22988773-22988899)
chr4 (99-223)||(10494628-10494752)
chr4 (125-219)||(7634998-7635092)
chr4 (97-167)||(13085398-13085471)
chr4 (100-158)||(6659640-6659697)
chr4 (117-179)||(9260313-9260375)
[»] chr3 (6 HSPs)
chr3 (102-223)||(365863-365983)
chr3 (102-172)||(3064051-3064121)
chr3 (114-223)||(8536655-8536764)
chr3 (102-178)||(2472969-2473045)
chr3 (102-138)||(43304270-43304306)
chr3 (120-165)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (97-167)||(45923-45993)
[»] scaffold0054 (3 HSPs)
scaffold0054 (102-219)||(10359-10476)
scaffold0054 (114-223)||(49018-49127)
scaffold0054 (119-158)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (106-219)||(145442-145555)
scaffold0024 (115-219)||(144177-144284)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 97 - 497
Target Start/End: Complemental strand, 35682036 - 35681636
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35682036 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgtt 35681937  T
Q  197 gactccttcaatgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaata 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35681936 gactccttcaatgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaata 35681837  T
Q  297 gcagactcacttgataattctgtataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaa 396  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681836 gcagactcacttgataattctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaa 35681737  T
Q  397 acgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtac 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681736 acgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtac 35681637  T
Q  497 c 497  Q
    |    
T  35681636 c 35681636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 320 - 497
Target Start/End: Complemental strand, 31635698 - 31635525
Alignment:
Q  320 ataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttatttaagag 419  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||| |||||||| ||||    
T  31635698 ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag 31635600  T
Q  420 aataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacc 497  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  31635599 aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacat---gcagaacaccaaatggtgagagtacc 31635525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 102 - 328
Target Start/End: Complemental strand, 31636112 - 31635882
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||  |||||||||| ||  ||||||| | || | ||||||||||||||    
T  31636112 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactc 31636013  T
Q  202 cttcaatgaacaagag----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatag 297  Q
    || |||||||||||||     ||||| |||||||||||||||||   |||  |||| |||||||||||| ||||||||||| |||  |||||||||||||    
T  31636012 ctccaatgaacaagagcacacccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatag 31635913  T
Q  298 cagactcacttgataattctgtataagttag 328  Q
    |||||||||||||||||||| ||||||||||    
T  31635912 cagactcacttgataattctatataagttag 31635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 22011198 - 22011076
Alignment:
Q  113 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaa 211  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||| ||||||   ||||| ||| |||||||||||||| |||||    
T  22011198 aaaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaag-aatttctcatgtatgttgactccttcgatgaa 22011100  T
Q  212 caagagaccacctggatcccattg 235  Q
    ||||| |||||| |||||||||||    
T  22011099 caagataccacccggatcccattg 22011076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 27952637 - 27952719
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 184  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  27952637 aaattattaataaaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagctt 27952719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 280297 - 280385
Alignment:
Q  125 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||||||| |||| |||||||||    
T  280297 catcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 2165706 - 2165636
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2165706 ctataaaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 2165636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 33053241 - 33053125
Alignment:
Q  106 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 205  Q
    ||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||  |||| |||||| ||||   || ||||| |||||||      
T  33053241 tactaaggaaacccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctct 33053143  T
Q  206 aatgaacaagagaccacc 223  Q
    ||| ||||||||||||||    
T  33053142 aataaacaagagaccacc 33053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 36648700 - 36648579
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat-aaagcgctttctatgcatgttgact 200  Q
    ||||||||||| |||||||||| ||| ||||||||||| || ||||||||||||| || ||||||  ||||||| |||| || ||| ||||||| |||||    
T  36648700 aaattactaaggaaaccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgc-ttccatgcatgatgact 36648602  T
Q  201 ccttcaatgaacaagagaccacc 223  Q
    | | ||||||| |||||||||||    
T  36648601 cttccaatgaataagagaccacc 36648579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 32162225 - 32162347
Alignment:
Q  99 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 198  Q
    |||||||| ||||| ||| |||| | ||| ||||||||||| ||||||| ||||| |||  |||||||| ||||||||||| |||| | |||||||||||    
T  32162225 ataaaatt-ctaaggaaatcctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttga 32162323  T
Q  199 ctccttcaatgaacaagagaccacc 223  Q
    || ||  ||||||||||||||||||    
T  32162324 ct-ctctaatgaacaagagaccacc 32162347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 18945739 - 18945646
Alignment:
Q  141 ctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaacaagagaccacctggatcccatt 234  Q
    ||||||| ||||||| ||||| ||||| ||||||| ||| | ||||| || |||||| |||||| ||||||||||||||||||||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagag-tttctcattcatgttaactcctgcaatgaacaagagaccacctggatcccatt 18945646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 23457462 - 23457389
Alignment:
Q  101 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 175  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||||||   ||||||||||| |||||||    
T  23457462 aaaattactaagaaaacc-tcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 36614921 - 36614845
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 178  Q
    ||||||||||| |||||||||| | | ||||||||||| || ||||||||||||| ||||||| |  ||||||||||    
T  36614921 aaattactaaggaaaccctcctacgtgagtctcctccatctatgaagaactcgactccgagtttttgttctgataaa 36614845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 102 - 497
Target Start/End: Complemental strand, 4303234 - 4302838
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| | |||||||| |||||    
T  4303234 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactc 4303135  T
Q  202 cttcaatgaacaagag----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatag 297  Q
    || |||||||||||||     ||||| |||||||||||||||||  ||||  |||| |||||||||||| ||| | ||||| |||  |||||||||||||    
T  4303134 ctccaatgaacaagagcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatag 4303035  T
Q  298 cagactcacttgataattctgtataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaa 397  Q
    |||| ||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |    
T  4303034 cagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttga 4302935  T
Q  398 cgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacc 497  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  4302934 cgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacat---gcagaacaccaaatggtgagagtacc 4302838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 11001090 - 11001202
Alignment:
Q  106 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 205  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| |||| | ||||||||| |||||| |    
T  11001090 tactaaggaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctcc 11001189  T
Q  206 aatgaacaagaga 218  Q
    |||||| ||||||    
T  11001190 aatgaaaaagaga 11001202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 1217473 - 1217591
Alignment:
Q  103 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactcc 202  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| | || |||||||| | |||| |||||||| |  |||    
T  1217473 aattactaataaaaccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatttc-atgcatgtcgtgtcc 1217570  T
Q  203 ttcaatgaacaagagaccacc 223  Q
    | |||| ||||||||||||||    
T  1217571 tccaattaacaagagaccacc 1217591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 1369620 - 1369529
Alignment:
Q  123 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaa 214  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||| | ||| |||||||||||| ||||||||||    
T  1369620 tgcatgagtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 8915437 - 8915551
Alignment:
Q  106 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 205  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| |||| |||||  || | | |||||||||||||||| |    
T  8915437 tactaaggaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctcc 8915535  T
Q  206 aatgaacaagagacca 221  Q
     |||||||||||||||    
T  8915536 gatgaacaagagacca 8915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 1786500 - 1786424
Alignment:
Q  103 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 179  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaag 1786424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 13882995 - 13883117
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgc--atgttgac 199  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||| |||||| | ||   ||||  |||||| |    
T  13882995 aaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggc 13883093  T
Q  200 tccttcaatgaacaagagaccacc 223  Q
    |||| |||| ||||||||||||||    
T  13883094 tcctccaataaacaagagaccacc 13883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 11228551 - 11228430
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    |||||||||||||| | ||||| |||| ||||||||| |||| ||||| ||||||| | |||||||||||| |||| ||||||  ||| | ||||||| |    
T  11228551 ctataaaattactatggaaaccatcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgat 11228453  T
Q  197 gactccttcaatgaacaagagac 219  Q
    |||||||  ||||||||||||||    
T  11228452 gactcctataatgaacaagagac 11228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 8e-84; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 222 - 497
Target Start/End: Complemental strand, 37193008 - 37192736
Alignment:
Q  222 cctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatagcagactcacttgataattctgtat 321  Q
    ||||||||||||||  ||||  ||||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||| ||     
T  37193008 cctggatcccattgagtgaactgtgagggtccctttttatggacaaagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctatac 37192909  T
Q  322 aagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttatttaagagaa 421  Q
    ||| ||||| | | ||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||  | |||||||||||||| ||||||    
T  37192908 aagctagagcattgttaagtgatgcctgaccatgttgtacttgaagtataggaatgaatgaaaccaacacagtaagtggatccctttttatttgagagaa 37192809  T
Q  422 taaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacc 497  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||   |||||||| |||||||||||||||||    
T  37192808 taaccaatatcctttttcatgaagtccaagtaaaggtttaataacat---gcagaacatcaaatggtgagagtacc 37192736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 23573365 - 23573240
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    ||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||| ||||| || || |||||||| |||| | |||||||||    
T  23573365 ctataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgtt 23573267  T
Q  197 gactccttcaatgaacaagagaccacc 223  Q
    ||||||| |||||||||| ||||||||    
T  23573266 gactcctccaatgaacaaaagaccacc 23573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 22922157 - 22922227
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22922157 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 22922227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 26377849 - 26377776
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 175  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  26377849 aaattactaagaaaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 22512360 - 22512435
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 177  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||    
T  22512360 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataa 22512435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 2688999 - 2688855
Alignment:
Q  99 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 198  Q
    |||||| ||||||  |||||||||| ||| |||||||||||||| |||||||||||| | ||||||||| |||| ||  || | || | |||||||||||    
T  2688999 ataaaaatactaaagaaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttga 2688902  T
Q  199 ctccttcaatgaacaagagaccacc----tggatcccattggttgaa 241  Q
    ||||| ||||||||| |||| ||||    ||||||||||||| ||||    
T  2688901 ctcctccaatgaacatgagatcaccctcatggatcccattgggtgaa 2688855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 2188719 - 2188783
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttct 166  Q
    ||||||||||| ||||| |||| | | ||||||||||| || ||||||||||||| |||||||||    
T  2188719 aaattactaaggaaaccttcctacgtgagtctcctccatctatgaagaactcgactccgagttct 2188783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 24577813 - 24577909
Alignment:
Q  125 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaagagacca 221  Q
    |||||||||||||||| ||||||||| ||||||  |||||||| |||||||| ||  |||    ||||| || |||||| |||| ||||||||||||    
T  24577813 catcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagagacca 24577909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 37193107 - 37193064
Alignment:
Q  110 aagaaaaccctcctgcatcagtctcctccacctctgaagaactc 153  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  37193107 aagaaaaccctcctgcatcagtttactccatctctgaagaactc 37193064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 21845197 - 21845335
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||    
T  21845197 ctataaaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgtt 21845296  T
Q  197 gactccttcaatgaacaagagaccacctggatcccattg 235  Q
    ||||||| |||||||||||| |||||| |||||||||||    
T  21845297 gactcctccaatgaacaagaaaccacccggatcccattg 21845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 18252241 - 18252124
Alignment:
Q  106 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 205  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||||| || |||||||  |||||| |||||||| ||||||| |    
T  18252241 tactaaggaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctcc 18252142  T
Q  206 aatgaacaagagaccacc 223  Q
    |||| |||||||||||||    
T  18252141 aatggacaagagaccacc 18252124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 19677630 - 19677672
Alignment:
Q  125 catcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677630 catcagtctcctccacctctgaagaactcgaccccgagttctc 19677672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 21849278 - 21849312
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagt 131  Q
    ||||||||||||||||||||||||| |||||||||    
T  21849278 ctataaaattactaagaaaaccctcgtgcatcagt 21849312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 21857192 - 21857226
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagt 131  Q
    ||||||||||||||||||||||||| |||||||||    
T  21857192 ctataaaattactaagaaaaccctcgtgcatcagt 21857226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 10927026 - 10926905
Alignment:
Q  98 tataaaattactaa-gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    |||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| | |||||||||    
T  10927026 tataaaattactaatgaaaatcatcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgtt 10926927  T
Q  197 gactccttcaatgaacaagaga 218  Q
    ||||||| ||||||| ||||||    
T  10926926 gactcctccaatgaataagaga 10926905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 10927934 - 10927811
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgt 195  Q
    |||||||||||||||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||| |||||| | ||||| ||||| ||    
T  10927934 ctataaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagag-tttctcatgcaagt 10927836  T
Q  196 tgactccttcaatgaacaagagacc 220  Q
    |||||| | |||| |||||||||||    
T  10927835 tgactcttacaataaacaagagacc 10927811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 13441901 - 13442015
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||   | ||||||| ||||||||||| |||| | ||||||||||||||    
T  13441901 aaattactaacaaaacccttctgcatcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgttgactc 13441998  T
Q  202 cttcaatgaacaagaga 218  Q
    || |||||| |||||||    
T  13441999 ctccaatgagcaagaga 13442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 23989055 - 23988929
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    |||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||  |||||||| || || ||||| |||| |  ||||||||    
T  23989055 ctatgaaattactaaggaaaccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgtt 23988956  T
Q  197 gactccttcaatgaacaagagaccacc 223  Q
     ||||||||||||| ||||||| ||||    
T  23988955 aactccttcaatgagcaagagatcacc 23988929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 8966022 - 8966094
Alignment:
Q  112 gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 184  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  8966022 gaaaaccttcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagctt 8966094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 31915365 - 31915240
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctcc---acctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttg 197  Q
    |||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| ||||||||||||| |||| || ||| | |||| || || |||||    
T  31915365 aaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttg 31915267  T
Q  198 actccttcaatgaacaagagaccacct 224  Q
    |||||| ||||||||||||||| ||||    
T  31915266 actcctccaatgaacaagagactacct 31915240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 40805685 - 40805571
Alignment:
Q  101 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgact 200  Q
    ||||||| |||| ||||  |||| |||||||||||||||||| | ||||| |||||||||||||||  ||||||||| | | ||   ||||||| |||||    
T  40805685 aaaattaataaggaaactatcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgact 40805586  T
Q  201 ccttcaatgaacaag 215  Q
    ||| | |||||||||    
T  40805585 cctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 31522647 - 31522584
Alignment:
Q  114 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 177  Q
    |||||||||| |||||| | | |||||||||||||||||||||  ||||||||| |||||||||    
T  31522647 aaaccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataa 31522584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 18203265 - 18203141
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| || | |||||| | |||| |||||||||    
T  18203265 ctataaaattactgagaaa-ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgtt 18203168  T
Q  197 gactccttcaatgaacaagagaccacc 223  Q
    |||||||  ||||||||||||||||||    
T  18203167 gactcctcgaatgaacaagagaccacc 18203141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 12881852 - 12881729
Alignment:
Q  99 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 198  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  |||||||||||||||||| |||| ||| ||| |||  ||| | |||||||||||    
T  12881852 ataaaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttga 12881754  T
Q  199 ctccttcaatgaacaagagaccacc 223  Q
    || ||||||||||||||||||||||    
T  12881753 cttcttcaatgaacaagagaccacc 12881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 22889080 - 22888963
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22889080 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactc 22888981  T
Q  202 cttcaatgaacaagagac 219  Q
    || |||||||||||||||    
T  22888980 ctccaatgaacaagagac 22888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 34374051 - 34374167
Alignment:
Q  106 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 205  Q
    ||||||| |||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| || |||||||| | || | |||||||||||||| | |    
T  34374051 tactaaggaaaccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttcc 34374150  T
Q  206 aatgaacaagagaccac 222  Q
    |||||||||||||||||    
T  34374151 aatgaacaagagaccac 34374167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 30049699 - 30049629
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30049699 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30049629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 30051986 - 30051916
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30051986 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30051916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 22873637 - 22873520
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||| ||||||||||||||| |||||||||| ||||||||| | ||| |||| ||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22873637 aaattattaagaaaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactc 22873538  T
Q  202 cttcaatgaacaagagac 219  Q
    || |||||||||||||||    
T  22873537 ctccaatgaacaagagac 22873520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 22910623 - 22910506
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  22910623 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactc 22910524  T
Q  202 cttcaatgaacaagagac 219  Q
    || |||||||||||||||    
T  22910523 ctccaatgaacaagagac 22910506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 3542026 - 3541959
Alignment:
Q  100 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3542026 taaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 3541959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 12778664 - 12778784
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    ||||| || ||||| |||||||||| | |||||||||||||||||||||||||||| |||||| | ||||| |||||||  || | || || ||||||||    
T  12778664 ctatagaaatactatgaaaaccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgtt 12778761  T
Q  197 gactccttcaatgaacaagagac 219  Q
    ||||||| |||||||||||||||    
T  12778762 gactcctccaatgaacaagagac 12778784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 11194443 - 11194398
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaa 147  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  11194443 aaattactaagaaaactctcctacatcagtctcctccacctctgaa 11194398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 8047661 - 8047717
Alignment:
Q  123 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 179  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  8047661 tgcatcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaag 8047717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 18726915 - 18726879
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtct 133  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18726915 ctataaaattactaaaaaaaccctcctgcatcagtct 18726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 32361173 - 32361109
Alignment:
Q  113 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 177  Q
    ||||||||||| ||| ||||| |||||||||| || ||||||||| ||||||||| || ||||||    
T  32361173 aaaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 18720069 - 18720031
Alignment:
Q  128 cagtctcctccacctctgaagaactcgaccccgagttct 166  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattct 18720031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 22716444 - 22716318
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22716444 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22716345  T
Q  197 gactccttcaatgaacaagagaccacc 223  Q
    ||||||| |||||||||||||||||||    
T  22716344 gactcctccaatgaacaagagaccacc 22716318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 22988773 - 22988899
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 196  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22988773 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22988872  T
Q  197 gactccttcaatgaacaagagaccacc 223  Q
    ||||||| |||||||||||||||||||    
T  22988873 gactcctccaatgaacaagagaccacc 22988899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 10494752 - 10494628
Alignment:
Q  99 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 198  Q
    |||||| ||||||| |||||||| | ||||||||| ||| || |||||||||||||||| | ||||||  | ||||||||  |||| | |||||||| ||    
T  10494752 ataaaaatactaaggaaaccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcga 10494653  T
Q  199 ctccttcaatgaacaagagaccacc 223  Q
    ||||| |||||||||||||||||||    
T  10494652 ctcctccaatgaacaagagaccacc 10494628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 7635092 - 7634998
Alignment:
Q  125 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaagagac 219  Q
    ||||||||||||||| ||||||||||||||||||| | ||||| |||| |||||  |||  | |||||||||||||||| | |||||||||||||    
T  7635092 catcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagagac 7634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 13085398 - 13085471
Alignment:
Q  97 ctataaaattactaagaaaa---ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    ||||||||||||||| ||||   ||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  13085398 ctataaaattactaaaaaaaacaccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctc 13085471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 6659640 - 6659697
Alignment:
Q  100 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccc 158  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  6659640 taaaattactaagaaa-ccctcctacatcagtctcctctacctctgaagaactcgaccc 6659697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 9260375 - 9260313
Alignment:
Q  117 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 179  Q
    ||||| ||||||| ||||||| || ||| |||||||||||||||||||||  || ||||||||    
T  9260375 ccctcatgcatcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaag 9260313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 365863 - 365983
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| || |||||||| || ||| ||| ||||||||||    
T  365863 aaattactaataaaatcctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagc-ttccatgtatgttgactc 365961  T
Q  202 cttcaatgaacaagagaccacc 223  Q
     | ||||||||| |||||||||    
T  365962 ttccaatgaacaggagaccacc 365983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 3064051 - 3064121
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttct 172  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3064051 aaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctcgttct 3064121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 8536655 - 8536764
Alignment:
Q  114 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaac 212  Q
    |||||||||| |||||| ||| ||||||||| ||||||||||| |||||||||  ||||||||||  | ||||| ||  |||||||||| | ||||||||    
T  8536655 aaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaag-tttctcatatatgttgactcttccaatgaac 8536753  T
Q  213 aagagaccacc 223  Q
    |||||| ||||    
T  8536754 aagagatcacc 8536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 2472969 - 2473045
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 178  Q
    |||||||||| |||||| |  || |||||  |||||||| | | |||||||||||||||||||||| ||||||||||    
T  2472969 aaattactaataaaacctttgtgtatcagcttcctccacttttaaagaactcgaccccgagttctcattctgataaa 2473045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 43304270 - 43304306
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctcc 138  Q
    |||||||||| ||||||||||||||||||||||||||    
T  43304270 aaattactaataaaaccctcctgcatcagtctcctcc 43304306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  120 tcctgcatcagtctcctccacctctgaagaactcgaccccgagttc 165  Q
    |||| ||||| |||||||||| || |||||||||||||||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 45923 - 45993
Alignment:
Q  97 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 167  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45923 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 45993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 10476 - 10359
Alignment:
Q  102 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 201  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  10476 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactc 10377  T
Q  202 cttcaatgaacaagagac 219  Q
    || |||||||||||||||    
T  10376 ctccaatgaacaagagac 10359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 49127 - 49018
Alignment:
Q  114 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaaca 213  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||     ||| |||||||||||||| | | |||||||    
T  49127 aaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaacttccatgcatgttgactcttcctatgaaca 49028  T
Q  214 agagaccacc 223  Q
     |||| ||||    
T  49027 cgagaacacc 49018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 37523 - 37484
Alignment:
Q  119 ctcctgcatcagtctcctccacctctgaagaactcgaccc 158  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcgaccc 37484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 145555 - 145442
Alignment:
Q  106 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactcctt 204  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |  ||||||||||| | | ||  | || ||||||||||||    
T  145555 tactaataaaaccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactcctt 145457  T
Q  205 caatgaacaagagac 219  Q
    |||||||||||||||    
T  145456 caatgaacaagagac 145442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 144177 - 144284
Alignment:
Q  115 aaccctcctgcatcagt---ctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactccttcaatga 210  Q
    |||||||||||||||||   |||||||| |||||||||||| || ||||||||||  ||||||||||| | | || || || ||| ||||||||| ||||    
T  144177 aaccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatga 144275  T
Q  211 acaagagac 219  Q
    |||||||||    
T  144276 acaagagac 144284  T

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