View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8507_low_5 (Length: 470)
Name: NF8507_low_5
Description: NF8507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8507_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 22 - 462
Target Start/End: Original strand, 48758938 - 48759378
Alignment:
| Q |
22 |
gagcgtgttcccgttactccgttcttcgaatccaacacttctcactctgttaaatcgcttaacaacaacaataacaactacgatgctgttaaagatgaag |
121 |
Q |
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| T |
48758938 |
gagcgtgttcccgttactccgttcttcgaatccaacacttctcactctgttaaatcgcttaacaacaacaataacaactacgatgctgttaaagatgaag |
48759037 |
T |
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| Q |
122 |
ctgaagctgcttcgtggttgatctctgatccgaaagcagatctcaactcatctccttatcttttctctgattccgaagctattccgtttatggatcttga |
221 |
Q |
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| T |
48759038 |
ctgaagctgcttcgtggttgatctctgatccgaaagcagatctcaactcatctccttatcttttctctgattccgaagctattccgtttatggatcttga |
48759137 |
T |
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| Q |
222 |
ttacggtgtaattgaacataaaaacgacggtgttgttcccgttcacggtaacttcgatccttttgtttctgcttacaagaacaacaacgtgcacttgcat |
321 |
Q |
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| T |
48759138 |
ttacggtgtaattgaacataaaaacgacggtgttgttcccgttcacggtaacttcgatccttttgtttctgcttacaagaacaacaacgtgcacttgcat |
48759237 |
T |
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| Q |
322 |
acagagttagaaacaccgtcacagtcgcagattagtcagagtgtaagagatcttagatctaagattctaagcttgatatatagacatagaaatattgatt |
421 |
Q |
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| T |
48759238 |
acagagttagaaacaccgtcacagtcgcagattagtcagagtgtaagagatcttagatctaagattctaagcttgatatatagacatagaaatattgatt |
48759337 |
T |
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| Q |
422 |
aatatatatcttacacttannnnnnngttatgattgattag |
462 |
Q |
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| T |
48759338 |
aatatatatcttacacttatttttttgttatgattgattag |
48759378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 12323826 - 12323753
Alignment:
| Q |
186 |
ctctgattccgaagctattccgtttatggatcttgattacggtgtaattgaacataaaaacgacggtgttgttc |
259 |
Q |
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| T |
12323826 |
ctctgattccaaacctatttcgttcatggatcttgatttcggtgttattgcccataaaaaagacggtgttgttc |
12323753 |
T |
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