View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_12 (Length: 390)
Name: NF8508_high_12
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 3298036 - 3298396
Alignment:
| Q |
19 |
aaaagacaccgcaaagaatcctctttccaacaatgtatggtgtgattatagtcaattcagcctagaattttttcnnnnnnntattgacactacttaaatc |
118 |
Q |
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| T |
3298036 |
aaaagacaccgcaaggaatcctctttccaacaatgcatggtgtgattatagtcaattcagcctagaattttttcaaaaaaatattgacactacttaaatc |
3298135 |
T |
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| Q |
119 |
ctcatcttaagttactcaaattttgatcactaaagcataaaaattggtcactaatttatttagcgatcgaaatggagaccgc--ttattattcgctattt |
216 |
Q |
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| T |
3298136 |
ctcatcttaagttactcaaatttagatcactaaagcataaaaattggtcactaatttatttagcgatcgaaatggagatcacaattattattcgctattt |
3298235 |
T |
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| Q |
217 |
tggttgtctttaaatatattttctatttgatcgttatttcagtcacaaatgttggacttannnnnnnnacaatggtttcttttcgttacataaattaact |
316 |
Q |
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| T |
3298236 |
tagttgtctttaaatatattttatatttgatcgttatttcagtcacaaatgttggacttattttttttacaacgatttcttttcgttgcataaattaact |
3298335 |
T |
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| Q |
317 |
aatttagaataaaatattaaacacactttatttatacttataactaatgactctatctttctt |
379 |
Q |
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| T |
3298336 |
aatttagaataaaatattaaacacactttatttatact--taactaatgattctatctttctt |
3298396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 35248981 - 35249024
Alignment:
| Q |
313 |
aactaatttagaataaaatattaaacacactttatttatactta |
356 |
Q |
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| T |
35248981 |
aactaacttagaataaaatattaaacacactttgtttatactta |
35249024 |
T |
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