View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_16 (Length: 352)
Name: NF8508_high_16
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 347
Target Start/End: Complemental strand, 7917351 - 7917008
Alignment:
| Q |
4 |
tggtgggtagataatacttaccttagaaattaatttttgagtgaaattctataatgagatgatagttcattttaagattaattgtgttgtgtgctattca |
103 |
Q |
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| T |
7917351 |
tggtgggtacgtaatacttaccttagaaattaatttttgagtgaaattctataatgagatcatagttcattttaagattaattgtgttgtgtgctattca |
7917252 |
T |
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| Q |
104 |
gtcaccactattggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaacatgcatgacaa |
203 |
Q |
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| T |
7917251 |
gtcaccactattggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaatatgcatgacaa |
7917152 |
T |
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| Q |
204 |
ttaatttataagtaatagatattgtattatgtccaactcaaattttaagattagttatttaggttatagattggatatactttgtagtgatctagcgtta |
303 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7917151 |
ttaatttataagtaatagatattgaattatgtccaactcaaattttaagattagttatttaggttatagattggatatactttgtagtgatctagagtta |
7917052 |
T |
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| Q |
304 |
ctatattgtaagaatgtggaaatgtaatactacaatgaattgga |
347 |
Q |
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| T |
7917051 |
ctatattgtaagaatgtggaaatgtaatactacaatgaattgga |
7917008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 6127438 - 6127488
Alignment:
| Q |
230 |
ttatgtccaactcaaattttaagattagttatttaggttatagattggata |
280 |
Q |
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| T |
6127438 |
ttatgttcaacctaaattctgagattagttatttaggttatagattggata |
6127488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 6152920 - 6152970
Alignment:
| Q |
230 |
ttatgtccaactcaaattttaagattagttatttaggttatagattggata |
280 |
Q |
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|||||| |||| |||||| | ||||||||| |||||||||||||||||||| |
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| T |
6152920 |
ttatgttcaacccaaattctgagattagttgtttaggttatagattggata |
6152970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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