View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_20 (Length: 325)
Name: NF8508_high_20
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 14856436 - 14856739
Alignment:
| Q |
19 |
accacagacgcaaacaagtaaaatctatgaataaactaaccttttcccatagtatcaattgcaatttgtgccattttcagttcacgagctttgtcactgt |
118 |
Q |
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| T |
14856436 |
accacacatgcaaacaagtaaaatctatgaataaactaaccttttcccatagtatcaattgcaatttgtgccattttcagttcacgagctttgtcactgt |
14856535 |
T |
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| Q |
119 |
ctttgtacatttgttgcaaa-----------ttgatcacgaaaagagtttgcatgcaaaacaaaatcatcagtggctaaacgcgttaaattcaataatat |
207 |
Q |
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| T |
14856536 |
ctttgtacatttgttgtaaacaaaccaaagattgatcacgaaaagagtttgcatgcaaaacaaaatcatcagtggctaaacgcgttaaattcaataatat |
14856635 |
T |
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| Q |
208 |
gtaaaataaaaacaagatatgtcaccaatcatcaagtctcacggtacgtattgtcaacattggtcattaagtatggggatttcctggctttcagctccac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14856636 |
gtaaaataaaaacaagatatgtcaccaatcatcaagtctcacggtacgtattgtcaacattggtcattaagtatggggatttcttggctttcagctccac |
14856735 |
T |
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| Q |
308 |
aatt |
311 |
Q |
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|||| |
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| T |
14856736 |
aatt |
14856739 |
T |
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