View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_21 (Length: 314)
Name: NF8508_high_21
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 43163660 - 43163905
Alignment:
| Q |
20 |
ccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctgtaattgtttttgctactaaaacatacattctggatttccggtgaatga |
119 |
Q |
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| T |
43163660 |
ccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctgtaattgtttttgctactaaaacatacattctggatttccagtgaatga |
43163759 |
T |
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| Q |
120 |
tattggaacgcttgttgttgtatgtagcgaacaaaaacatcacgtagatgcatgaactattaacaattgttagatcttgcgtttgtaggaaaacatgggt |
219 |
Q |
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| T |
43163760 |
taatggaacgattgttgttgtatgtagcgaacaaaaacatcacttagatgcatgaactattaacaattgttagatcttgcgtttgtaggaaaacatgggt |
43163859 |
T |
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| Q |
220 |
ggattaaaataagaaggatcac--tacagtgagatacttcccaatg |
263 |
Q |
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| T |
43163860 |
ggattaaaataagaaggatcactatatagtgagatacttcccaatg |
43163905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 51466647 - 51466770
Alignment:
| Q |
111 |
ggtgaatgatattggaacgcttgttgttgtatgtagcgaacaaaaacatcacgtagatgcatgaactattaa-caattgttagatcttgcgtttgtagga |
209 |
Q |
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| T |
51466647 |
ggtgaattatattggaacaagtgttgctatatgtggtgaacaaaaatatcacgaagatgaactaactaataggcaatagttagatcttgcatttggagga |
51466746 |
T |
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| Q |
210 |
aaacatgggtggattaaaataaga |
233 |
Q |
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| T |
51466747 |
aaacatgggtggataaaaataaga |
51466770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 51464611 - 51464662
Alignment:
| Q |
20 |
ccttgttgcatcatgttttgcgaaatgtgggagatgttcatttgatgtcctg |
71 |
Q |
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| T |
51464611 |
ccttgttgcagcatgttttacataatgtgggaaatgttcatttgatgtcctg |
51464662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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