View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_23 (Length: 309)
Name: NF8508_high_23
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 46823723 - 46823589
Alignment:
| Q |
1 |
agatattcgatcatatgtcagcttcaaaataattggtaattggtttcctagacaatgttaagctggaaattgcatagaaaaatatctcaaaagagataca |
100 |
Q |
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| T |
46823723 |
agatattcgatcatatgtcagcttcaaaataattggtaattggtttcctagacaatgttaagctggaaattgcatagaaaaatatctcaaaagagataca |
46823624 |
T |
|
| Q |
101 |
tgagggatgacannnnnnngctaatcattttaagc |
135 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
46823623 |
tgagggatgacatttttttgctaatcattttaagc |
46823589 |
T |
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