View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_24 (Length: 295)
Name: NF8508_high_24
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 56312712 - 56312444
Alignment:
| Q |
14 |
atgaattagagcagtagtatttggtaattaaggagaagtaattattatataccttttgatatcgttcggtttcatgttggggtaatctatactcattcat |
113 |
Q |
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| T |
56312712 |
atgaattagagcagtaatatttggtaattaaggagaagtaattattatataccttttgatatcgttcggtttcatgttggggtaatctatactcattcat |
56312613 |
T |
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| Q |
114 |
aatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaacggaagttttcagttcgaatcatccta |
213 |
Q |
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| T |
56312612 |
aatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttcttgagtccaattgaacggaagttttcagttcgaatcatccta |
56312513 |
T |
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| Q |
214 |
tctgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttc |
282 |
Q |
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| T |
56312512 |
tccgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgtttcgatacttc |
56312444 |
T |
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