View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_high_3 (Length: 606)
Name: NF8508_high_3
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 9e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 42036954 - 42037111
Alignment:
| Q |
19 |
aattgagattgtaaatacatatattaatgttaccaagccagccaaaccaaagagaaaaatcaatgaattacaacatattgtatatttgtattaatatgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42036954 |
aattgagattgtaaatacatatattaatgttaccaagccagccaaaccaaagagaaaaatcaatgaattacaacatattgtatatttgtattaatatgat |
42037053 |
T |
|
| Q |
119 |
aaatgcgtttctgtcccttgagaggaagaataccttctctttatgcagcctactagta |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037054 |
aaatgcgtttctgtcccttgagaggaagaataccttctctttatgcagcctactagta |
42037111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 447 - 588
Target Start/End: Original strand, 42037331 - 42037472
Alignment:
| Q |
447 |
gtatctggtctagctgccaatacttactcaattgaacacacatacacaatcataaaagatgcggtgaccgagttcgaactcatcatacacgattaaccct |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037331 |
gtatctggtctagctgccaatacttactcaattgaacacacatacacaatcataaaagatgtggtgaccgagttcgaactcatcatacacgattaaccct |
42037430 |
T |
|
| Q |
547 |
acttctttgtactttctttcttttcaatttgttttatactac |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037431 |
acttctttgtactttctttcttttcaatttgttttatactac |
42037472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 222 - 393
Target Start/End: Original strand, 42037105 - 42037277
Alignment:
| Q |
222 |
actaatattaacatatatcattatcttattttgaaaatgttaaggttcaatcaaaagatgaacttgaaagatttttcttattgaagaggctgaaagatta |
321 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037105 |
actagtattaacatatatcattatcttattttgaaaatgttaaggttcaatcaaaagatgaacttgaaagatttttcttattgaagaggctgaaagatta |
42037204 |
T |
|
| Q |
322 |
tctcaatggttgttac-nnnnnnnntctaaattatctctaattgtatgatacaaaattttgaaattgctagag |
393 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42037205 |
tctcaatggttgttacaaaaaaaaatctaaatcatctctaattgtatgatacaaaattttgaaattgctagag |
42037277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University