View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_30 (Length: 276)
Name: NF8508_high_30
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 38950203 - 38950452
Alignment:
| Q |
11 |
tgttcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtagatgtcaggtgatgaag |
110 |
Q |
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| T |
38950203 |
tgttcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtagatgtcaggtgatgaag |
38950302 |
T |
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| Q |
111 |
atgagccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttgcttctttcacatttttggcctcggcggcaggggcgctcttcctc |
210 |
Q |
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| T |
38950303 |
atgagccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttgcttctttcacatttttggcctcggcggcaggggcgctcttcctc |
38950402 |
T |
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| Q |
211 |
ttcccctcttctgcttttctgatgatgtggcctcctccactcgtcctctt |
260 |
Q |
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| T |
38950403 |
ttcccctcttctgcttttctgatgatgtggcctcctccactcgtcctctt |
38950452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 38942770 - 38942922
Alignment:
| Q |
14 |
tcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtagatgtcaggtgatgaagatg |
113 |
Q |
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| T |
38942770 |
tcagcactgagtcttagccacctgagagctgggaggtcgaagctggtgatagttttgattctaccagcttgagggttgtagatgtcaggtgatgaagatg |
38942869 |
T |
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| Q |
114 |
agccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttg |
166 |
Q |
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| T |
38942870 |
agaccatgttctggtgaagcctggcagtgcaaattgtttccgcaagaccgttg |
38942922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 38942936 - 38942965
Alignment:
| Q |
216 |
ctcttctgcttttctgatgatgtggcctcc |
245 |
Q |
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| T |
38942936 |
ctcttctgcttttctgatgatgtggcctcc |
38942965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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