View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_41 (Length: 241)
Name: NF8508_high_41
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49690711 - 49690933
Alignment:
| Q |
1 |
ttcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaag |
100 |
Q |
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| T |
49690711 |
ttcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaaccaaaagaggaaaactcttccaag |
49690810 |
T |
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| Q |
101 |
ttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcag |
200 |
Q |
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| T |
49690811 |
ttaaaaagattgataatcactggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcag |
49690910 |
T |
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| Q |
201 |
ctatgttaatattaccctccctc |
223 |
Q |
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| T |
49690911 |
ctatgttaatattaccctccctc |
49690933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 49679076 - 49679295
Alignment:
| Q |
1 |
ttcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaag |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| | ||||||||||| |||| |
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| T |
49679076 |
ttcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagcacgtccagttaaccaaaggaggaaaactctttcaag |
49679175 |
T |
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| Q |
101 |
ttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcag |
200 |
Q |
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| T |
49679176 |
ttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaagaatgcttgtgaggcattcag |
49679275 |
T |
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| Q |
201 |
ctatgttaatattaccctcc |
220 |
Q |
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| T |
49679276 |
ccatgttaatattacactcc |
49679295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 49686451 - 49686649
Alignment:
| Q |
1 |
ttcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||| | |||| | ||||||| ||| |||| |
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| T |
49686451 |
ttcccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaaggaggaaaacactttcaag |
49686550 |
T |
|
| Q |
101 |
ttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcag |
200 |
Q |
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| T |
49686551 |
ttacaaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttag |
49686644 |
T |
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