View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_49 (Length: 225)
Name: NF8508_high_49
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2255273 - 2255497
Alignment:
| Q |
1 |
cctaaataaaattagtgtannnnnnnaagtgaactttatgaatgtatttagtctacgaaactagaataattatatgtacttgttacttactcctacacaa |
100 |
Q |
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| T |
2255273 |
cctaaataaaattagtgtatttttttaagggaactttatgtatgtatttagtctacgaaactagaataattatatgtacttattacttactcctacacaa |
2255372 |
T |
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| Q |
101 |
gacataagttatgtgcatttgaatatttaatggggggagaggggtggtggtgactgacaggttaccggctacaggaggttgtcgggtggtggtgggaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2255373 |
gacataagttatgtgcatttgaatatttaatggggggagaggggtggtggtgactgacatgttaccggctacaggaggttgtcgggtggtggtgggaatg |
2255472 |
T |
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| Q |
201 |
caacggcgcatcaacctgcaaagaa |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
2255473 |
taacggcgcatcaacctgcaaagaa |
2255497 |
T |
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