View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_5 (Length: 546)
Name: NF8508_high_5
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 211 - 530
Target Start/End: Original strand, 9111623 - 9111944
Alignment:
| Q |
211 |
tatttgtcaatgcaaaatttctattattaaaattttaacacgagcctttaaaacacaaattagaaaatatctnnnnnnnnn--ttatataaaaattaaac |
308 |
Q |
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| T |
9111623 |
tatttgtcaatgcaaaatttctattattaaatttttaacacgagcctttaaaacacaaattagaaaatatctaaaaaaaaaaattatataaaaattaaac |
9111722 |
T |
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| Q |
309 |
ttgtttttgatgcaaaaattaaacttacaatatcctcattttgaatgaaagaagaacatatatattttgaccaacttaaaaaagatgtcggcatatatga |
408 |
Q |
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| T |
9111723 |
ttgtttttgatgtaaaaattaaacttacaatatcctcattttgaatgaaagaagaacatatatattttgaccaacataaaaaagatgtcggcatatatga |
9111822 |
T |
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| Q |
409 |
tacaacgtcggcatatatgagacaattgtacaatgttggcattattgtttctcaagctccacctgtccatattttctgtatgctcacgtgcttctgcaaa |
508 |
Q |
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| T |
9111823 |
tacaacgtcggcatatatgagacaattgtacaatgttggcattattgtttctcaagctccacctgtccatattttctgtatgctcacgtgcttctgcaaa |
9111922 |
T |
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| Q |
509 |
tgattcttctcttataaatttt |
530 |
Q |
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|||||||||||||||| ||||| |
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| T |
9111923 |
tgattcttctcttatatatttt |
9111944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9111282 - 9111497
Alignment:
| Q |
1 |
agatgtagtctacacgtcgtagttgataaaatcgcagaagatgagggacaaaatggaggga--tataggtcgcatgatgaaggtcacgatgaagtttgca |
98 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||| ||||||| |
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| T |
9111282 |
agatgtagtctacatgtcgtagttgatgaaatcgcagaagacgagggacgaaatggagggagatataggtcgcatgatgaaagtcacgatgaggtttgca |
9111381 |
T |
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| Q |
99 |
ggatgaaggtcttgatggagggtgtagaattgagaacaaacgttaagaaactcaatatcaaaataaatatcttaacattcgttcattcaaatatttaaaa |
198 |
Q |
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| T |
9111382 |
ggatgaaggtcttgatggagggtgtagaattgaggacaaacgttaagaaactcaatatcaaaataaatatcttaacattcgttcattcaaatatttaaaa |
9111481 |
T |
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| Q |
199 |
gtcataataatatatt |
214 |
Q |
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| T |
9111482 |
gacataataatatatt |
9111497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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