View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_high_8 (Length: 479)
Name: NF8508_high_8
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 7916999 - 7916536
Alignment:
| Q |
1 |
aaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcctacaaatctatatatcttaattgatttgactattaatttatctttattta |
100 |
Q |
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| T |
7916999 |
aaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcctaaaaatctatatatcttaattgatttgactattaatttatcattattca |
7916900 |
T |
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| Q |
101 |
tgagttaaatatggctttaacactttgacatgactttaatatttggacatgtaatttaacagattgaaagtaccctacaacatcttcgcaacggtggttc |
200 |
Q |
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| T |
7916899 |
tgagttaaatatggctttaacactttgacatgactttaatatttggacatgtaatgtaacagattgaaagcaccctacaacatcttcgcaacggtggttc |
7916800 |
T |
|
| Q |
201 |
tattaggagtgaggtaaattaattacagtcaaatttggcattttcttataactaaattctttttatgatatcattacttttgccaagtacttttgaacac |
300 |
Q |
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| T |
7916799 |
tattaggagtgaggtaaattaattacagtcaaatttggcattttcttataacgaaattctttttatgatatcattactttttccaagtacttttgaacac |
7916700 |
T |
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| Q |
301 |
acgtatttctattatatcagattttaa-aaaattcatgtacttttacttttctgtattttgcaaatatatatgttacacaggatatgatgatacttgatt |
399 |
Q |
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| T |
7916699 |
acgtatttctattatatcagattttaaaaaaattcatgtacttttacttttctgtattttgcaaatatatatgttacacaggatatgatgatacttgatt |
7916600 |
T |
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| Q |
400 |
ttttggtcacgataaatccgctaattgattcagatgattggttgaacgaggtaaacgttatgta |
463 |
Q |
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| T |
7916599 |
ttttggtcaccataaatccgctaattgattcagatgattggttgaacgaggtaaacgttatgta |
7916536 |
T |
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