View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_10 (Length: 507)
Name: NF8508_low_10
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 215 - 346
Target Start/End: Complemental strand, 13082858 - 13082727
Alignment:
| Q |
215 |
ttgtgcatcctaccttcccatgataagagtgcatcttcatatttccaagttctttgacggtggctaaaccctttgttccaccatttccttgacaggcatc |
314 |
Q |
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| T |
13082858 |
ttgtgcatcctaccttcccatgataagagtgcatcttcatatttccaagttctttgacggtggctaaaccctttgttccaccatttccttgacaggcatc |
13082759 |
T |
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| Q |
315 |
ttgactatgtatctttttagaatgttttgcag |
346 |
Q |
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| T |
13082758 |
ttgactatgtatctttttagaatgttttgcag |
13082727 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 13083046 - 13082975
Alignment:
| Q |
144 |
tgattacatcaagcctatatatttttaacatctctaataataacaaagtcttaagaatgtggtatgtcaaat |
215 |
Q |
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| T |
13083046 |
tgattacatcaagcctatatatttttaacatctctaataataacaaagtcttaagaatgtggtatgtcaaat |
13082975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 28956435 - 28956467
Alignment:
| Q |
399 |
atgacaattggatccaggcccgatggatacccg |
431 |
Q |
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| T |
28956435 |
atgacaattggatccaggcccgatggacacccg |
28956467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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