View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_low_11 (Length: 480)
Name: NF8508_low_11
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Original strand, 44144712 - 44145166
Alignment:
| Q |
11 |
agataatactgaacctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaatnnnnnnn |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144712 |
agataatactgaatctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaataaaaaaa |
44144811 |
T |
|
| Q |
111 |
nnn----tcgtaaataaacaaatataatatcaggtgttttattgtcaaaaattgcaatcaaatttagactcacttgcaagtttcgaataggaggattatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144812 |
aaaaaaatcgtaaataaacaaatataatatcaggtgttttattgtcaaaaaatgcaatcaaatttagactcacttgcaagtttcgaataggaggattatt |
44144911 |
T |
|
| Q |
207 |
ttaatctttttaacatgtaaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctggaccattttaaaaccaaagtc |
306 |
Q |
| |
|
||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
44144912 |
ttaatttttttgacatgaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctggaccattttacaaccaaagtc |
44145011 |
T |
|
| Q |
307 |
ctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttct |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145012 |
ctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttct |
44145111 |
T |
|
| Q |
407 |
gcgtccgagtcaatgatcaaattgtggaaatcttgcatctgaacccgttgcaaac |
461 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44145112 |
gcgtctgagtcaatgatcaaattgtggaaatcttgcatctaaacccgttgcaaac |
44145166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 40893332 - 40893439
Alignment:
| Q |
225 |
aaacaagattttcattagagacataataagtcataacaaatacaattcatggcagggtctggaccatttta----aaaccaaagtcctagaattcatgtg |
320 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||| ||||| ||||||| |||||||||| ||| ||||| | | | | ||||||||||||||||||| |
|
|
| T |
40893332 |
aaacaagactttcattagagccatat--agtcaaaacaagtacaattgatggcagggtttgggacatttcagttcacaaccaagtcctagaattcatgtg |
40893429 |
T |
|
| Q |
321 |
ctgcagtatt |
330 |
Q |
| |
|
|||||||||| |
|
|
| T |
40893430 |
ctgcagtatt |
40893439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University