View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8508_low_13 (Length: 472)

Name: NF8508_low_13
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8508_low_13
NF8508_low_13
[»] chr7 (11 HSPs)
chr7 (204-457)||(4501667-4501920)
chr7 (18-213)||(4502011-4502206)
chr7 (318-457)||(5827663-5827802)
chr7 (320-457)||(32585556-32585693)
chr7 (318-457)||(24527999-24528138)
chr7 (362-457)||(10905512-10905607)
chr7 (318-457)||(47679533-47679669)
chr7 (382-457)||(45613465-45613540)
chr7 (381-457)||(43857273-43857349)
chr7 (360-457)||(4175621-4175725)
chr7 (391-458)||(28516919-28516986)
[»] chr2 (12 HSPs)
chr2 (318-457)||(4412625-4412764)
chr2 (318-457)||(41867467-41867606)
chr2 (318-457)||(44686826-44686965)
chr2 (318-457)||(9684974-9685113)
chr2 (318-457)||(17345047-17345186)
chr2 (318-457)||(20142299-20142438)
chr2 (318-457)||(19161385-19161523)
chr2 (329-457)||(28225409-28225537)
chr2 (318-387)||(18744577-18744646)
chr2 (346-457)||(33612128-33612239)
chr2 (408-457)||(5532835-5532884)
chr2 (368-456)||(40856781-40856869)
[»] chr5 (13 HSPs)
chr5 (318-457)||(15291582-15291721)
chr5 (318-457)||(433701-433840)
chr5 (317-458)||(27337101-27337242)
chr5 (318-444)||(25662876-25663002)
chr5 (318-457)||(3113725-3113864)
chr5 (351-457)||(26212175-26212281)
chr5 (317-439)||(32269351-32269473)
chr5 (318-458)||(6534122-6534262)
chr5 (390-443)||(38446589-38446642)
chr5 (410-457)||(35310857-35310904)
chr5 (337-432)||(27355295-27355390)
chr5 (348-415)||(35456213-35456280)
chr5 (391-456)||(13166542-13166607)
[»] chr3 (9 HSPs)
chr3 (318-457)||(52411461-52411600)
chr3 (318-457)||(53786117-53786256)
chr3 (318-457)||(29862206-29862346)
chr3 (348-457)||(7501728-7501836)
chr3 (338-423)||(35236571-35236656)
chr3 (318-400)||(49018418-49018500)
chr3 (373-441)||(43123569-43123637)
chr3 (353-420)||(52741121-52741188)
chr3 (373-439)||(37992743-37992809)
[»] chr6 (13 HSPs)
chr6 (324-457)||(4206161-4206294)
chr6 (322-457)||(45232-45367)
chr6 (322-457)||(34304906-34305041)
chr6 (318-455)||(29337645-29337782)
chr6 (361-457)||(32116098-32116194)
chr6 (345-443)||(12401749-12401847)
chr6 (318-422)||(8374857-8374961)
chr6 (322-457)||(32120338-32120472)
chr6 (321-431)||(23910852-23910962)
chr6 (329-422)||(26225242-26225335)
chr6 (411-457)||(357369-357415)
chr6 (362-423)||(22986362-22986423)
chr6 (362-423)||(23801971-23802032)
[»] chr8 (10 HSPs)
chr8 (318-457)||(24125437-24125575)
chr8 (318-457)||(39435076-39435215)
chr8 (318-457)||(500636-500775)
chr8 (322-444)||(37517511-37517633)
chr8 (329-457)||(25021372-25021502)
chr8 (318-439)||(42921689-42921810)
chr8 (318-420)||(4006999-4007104)
chr8 (319-441)||(36005927-36006048)
chr8 (330-459)||(10189950-10190079)
chr8 (337-406)||(10556106-10556175)
[»] chr1 (11 HSPs)
chr1 (318-458)||(28040686-28040826)
chr1 (318-423)||(19035870-19035975)
chr1 (332-457)||(37200664-37200789)
chr1 (318-457)||(34644975-34645114)
chr1 (318-457)||(38731992-38732131)
chr1 (318-457)||(7794474-7794613)
chr1 (317-441)||(15585285-15585409)
chr1 (361-457)||(22375128-22375224)
chr1 (322-444)||(37917657-37917779)
chr1 (403-455)||(22347288-22347340)
chr1 (370-445)||(35386927-35387002)
[»] chr4 (6 HSPs)
chr4 (318-457)||(53170907-53171046)
chr4 (318-457)||(16957945-16958083)
chr4 (337-448)||(56461692-56461803)
chr4 (318-431)||(48505757-48505870)
chr4 (388-457)||(12917995-12918064)
chr4 (318-411)||(32335307-32335399)
[»] scaffold0186 (1 HSPs)
scaffold0186 (318-454)||(20133-20269)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 204 - 457
Target Start/End: Complemental strand, 4501920 - 4501667
Alignment:
Q  204 tatagatataaagcaatcaaccgataaaatgttaaaattgttaagccgtacataatgattggaatttaaacctcagtctttttacttgtgcgtgagtttc 303  Q
    |||| |||||||||   |||||| ||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  4501920 tatatatataaagctgccaaccggtaaaatgttgatattgttaagccgtacatcgtgattggaatttaaacctcagtctttttatttgtgcgtgagtttc 4501821  T
Q  304 aataattatttcattagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccatta 403  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4501820 aataactatttcattagctatcccgattgatatgttaggtcagcatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccatta 4501721  T
Q  404 tttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  4501720 ttttctattgatgaggtgtgtcatgtttgtcgtaaggcgtgcctggatactttt 4501667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 4502206 - 4502011
Alignment:
Q  18 aattaggtgggaaagcgattagaggaaaattcacattcaactagattgaactttcagatagtgatcaattcaatcaaacgaaagtggccaaatcccttgg 117  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  4502206 aattgggtgggaaagcgattagaggaaaaatcacattcatctagattgaactttcggatagtgatcaattcaatcaaacggaagtggccaaatcccttgg 4502107  T
Q  118 actaagacactcgccaattcaataatggtacgaaaatctcaatttaatgtggtctttatcactgaattaatcatacgtcatagatgtatagatata 213  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4502106 actaagacacttgccaattcaataatggtacgaaaatctcaatttaatgtggtctttatcactgaattaatcatacgtcatagatgcatatatata 4502011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 5827802 - 5827663
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| |||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||  |||||||||    
T  5827802 tagctatcccaattgatgggttaggtcagcatatgtcaccagtggagtaccgtactatccttcgatatcgtcttatgattccactatttcttattgatga 5827703  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| |||||||||||||||||||| ||| ||||||||    
T  5827702 ggtgtgccctgtttgtcgtaaggcgtgtctggatactttt 5827663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 320 - 457
Target Start/End: Complemental strand, 32585693 - 32585556
Alignment:
Q  320 gctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgagg 419  Q
    ||||||| ||||||||  ||| ||||| |||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  32585693 gctatcctgattgatggattatgtcagcatatgtcaccaatgaagtaccgtactatccttagatttcgtcttatgattccactatttcctattaatgagg 32585594  T
Q  420 tgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||| ||| ||||||||||||| || ||| ||||||||    
T  32585593 tgtgccctatttgtcgtaaggcatgtctggatactttt 32585556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 24528138 - 24527999
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||||  |||||||| |||||| ||  ||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| |||||  ||||| |||    
T  24528138 tagctatcatgattgatgggttaggacaacatatgtcaccagtggagtatcatactatcattagatatcgccttatgattccactatttcttattgttga 24528039  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    || ||| ||||||||||||||||||| |||| ||||||||    
T  24528038 ggggtgccctgtttgtcgtaaggcgtacctggatactttt 24527999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 362 - 457
Target Start/End: Complemental strand, 10905607 - 10905512
Alignment:
Q  362 gagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||   |||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  10905607 gagtatcgtactatccttagatatcatcttatgattccactatttctcattgatgaggtgtgccctatttgtcgtaaggcttgcctggatactttt 10905512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 47679669 - 47679533
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||||| |||||||| |||| ||||  ||||||||    ||||||| |||||||||| ||||||| | || ||||||||| ||||| ||||||| ||    
T  47679669 tagctatcctgattgatgagttatgtcaacatatgtcag---tggagtaacgtactatccatagatattgcctcatgattccactatttgctattgacga 47679573  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||  ||||||||||||||||| || || ||||||||    
T  47679572 ggtgtgctctgtttgtcgtaaggcgcgcttggatactttt 47679533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 457
Target Start/End: Original strand, 45613465 - 45613540
Alignment:
Q  382 atatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||| | ||||| ||||  || ||||||||    
T  45613465 atatcgtcttatgattccactatttcctattgatgaggtgtgtcctgtttattgtaagacgtgtatggatactttt 45613540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 43857349 - 43857273
Alignment:
Q  381 gatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||||| ||||||||||| | ||| ||||||||||||||| || |||||||||||||| ||| ||  ||||||||    
T  43857349 gatatcgtgttatgattccactgttttctattgatgaggtgtttcttgtttgtcgtaaggtgtgtctagatactttt 43857273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 360 - 457
Target Start/End: Complemental strand, 4175725 - 4175621
Alignment:
Q  360 tggagtatcgtactatccttagatatcgtcttatgattccattatt---ta----ctattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaata 452  Q
    ||||||| |||||||||||||||||  | |||||||||||| ||||   ||    ||||||||| |||||| ||||||| || |||||||||||| ||||    
T  4175725 tggagtaccgtactatccttagatagtgccttatgattccactattccctattggctattgatgtggtgtgccctgtttttcctaaggcgtgcctaaata 4175626  T
Q  453 ctttt 457  Q
    |||||    
T  4175625 ctttt 4175621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 458
Target Start/End: Original strand, 28516919 - 28516986
Alignment:
Q  391 tatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttta 458  Q
    |||||||||| | |||  ||||||||||||||| ||||||||||||||||| ||  || |||||||||    
T  28516919 tatgattccacttttttttattgatgaggtgtgccctgtttgtcgtaaggcatgtttggatactttta 28516986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 4412625 - 4412764
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  4412625 tagctatcccgattgatgagttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcttatgattccactatttcctattgatga 4412724  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| | |||| ||||||||||||| ||| ||||||||    
T  4412725 ggtgtgccttgttggtcgtaaggcgtgtctggatactttt 4412764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 41867467 - 41867606
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  41867467 tagctatcccgattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcttatgattccactatttcctattgatga 41867566  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||  |||||||||||||| |||| ||| ||||||||    
T  41867567 ggtgtgctctgtttgtcgtaagtcgtgtctggatactttt 41867606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 44686965 - 44686826
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||    
T  44686965 tagctatctcaattgatgggttaggtcagtatatgtcaccaatggagtatcgtactatccttcgatatcgtcttatgattccactatgtcctattgatga 44686866  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||||||||||||||||||  ||| ||| ||||||||    
T  44686865 ggtgtgtcctgtttgtcgtaagatgtgtctggatactttt 44686826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 9684974 - 9685113
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  9684974 tagctatccctattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgccttacgattccactatttcctattgatga 9685073  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    || ||| |||||||||||||||||||| ||| ||||||||    
T  9685074 ggcgtgccctgtttgtcgtaaggcgtgtctggatactttt 9685113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 17345186 - 17345047
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| |||||||| | ||||||||| | |||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||    
T  17345186 tagctatcccaattgatgggttaggtcggcatatgtcactagtggagtatcgtactatccttagatatcgccttatgaatccactatttcctattgatga 17345087  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  17345086 ggtgtgccctgtttgtcgtaaggcgtgcctggatactttt 17345047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 20142299 - 20142438
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||||||||||| |||| ||||| |||||||| || |||||||| ||||||||||||||||||| |||||||||||| ||||| ||| ||||||    
T  20142299 tagctatcccgattgatgggttaagtcagcatatgtcaacagtggagtattgtactatccttagatatcgccttatgattccactatttcctaatgatga 20142398  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| |||||||||||||||||||| ||| ||||||||    
T  20142399 ggtgtgccctgtttgtcgtaaggcgtgtctggatactttt 20142438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 19161385 - 19161523
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||||| |||||||  |||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| || ||||| ||||  ||||    
T  19161385 tagctatcctgattgataggttaggtcagcatatgtcatcagtggagtatcgtactatcattagatatcgtcttatgattgcactatttcctatcaatga 19161484  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||| ||  ||||||||||||||||| ||||| ||||||||    
T  19161485 ggt-tgctctgtttgtcgtaaggcgcgcctggatactttt 19161523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 457
Target Start/End: Complemental strand, 28225537 - 28225409
Alignment:
Q  329 attgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctg 428  Q
    ||||||| ||||| |||| |||||||||||  |||||| |||||||||| | |||||| ||||||||||||||||||| | |||||||||||||| | ||    
T  28225537 attgatgggttagatcagcatatgtcaccagcggagtaccgtactatccgtcgatatcatcttatgattccattattttccattgatgaggtgtgccatg 28225438  T
Q  429 tttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||||||| |||| ||  ||||||||    
T  28225437 tttgtcgtaagacgtgtctagatactttt 28225409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 18744577 - 18744646
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcg 387  Q
    |||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  18744577 tagctatcccgattgatgggttaggttagcatatgtcaccagtggagtatcgtactatccttagatatcg 18744646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 457
Target Start/End: Original strand, 33612128 - 33612239
Alignment:
Q  346 gtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgc 445  Q
    ||||||||||||| || | ||||  ||||||| ||||||||  ||||||||| || |||||  ||||||||||||||||| |||||||||||| | |||     
T  33612128 gtatatgtcaccattgaaatatcacactatccctagatatcaccttatgatttcactatttcatattgatgaggtgtgtcatgtttgtcgtaaagtgtgt 33612227  T
Q  446 ctgaatactttt 457  Q
    ||| ||||||||    
T  33612228 ctggatactttt 33612239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 5532884 - 5532835
Alignment:
Q  408 ctattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||||  ||||||| ||||||||| ||||| |||||||||||||||||    
T  5532884 ctattgaaaaggtgtgccctgtttgttgtaagacgtgcctgaatactttt 5532835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 40856869 - 40856781
Alignment:
Q  368 cgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatacttt 456  Q
    |||||||||||||||||| |||| ||| |||| ||||||  |||| ||||||| || | |||||   |||||||||||||  |||||||    
T  40856869 cgtactatccttagatattgtctcatggttcccttatttcttattaatgaggtatgacatgttttcagtaaggcgtgcctatatacttt 40856781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 15291582 - 15291721
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  15291582 tagctatcccaattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcgtatgattccactattttctattgatga 15291681  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||||| ||||| |||||||||||| ||| ||||||||    
T  15291682 ggtgtgtcatgtttatcgtaaggcgtgtctggatactttt 15291721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 433840 - 433701
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| |||||| ||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||||| | ||| ||||||||||    
T  433840 tagctatcccaattgatgggttaggccagcatatgtcaccaattgagtatcggactatccttcgatatcgtcttatgattccactttttcctattgatga 433741  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||  ||||||||||||||||||| ||| ||||||||    
T  433740 ggtgtgcactgtttgtcgtaaggcgtgtctggatactttt 433701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 317 - 458
Target Start/End: Complemental strand, 27337242 - 27337101
Alignment:
Q  317 ttagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatg 416  Q
    ||||||||||| ||||||| ||||||| || ||||||||||| | ||||| |||||||||||| |||||||||||||||||||| | ||| |||||||||    
T  27337242 ttagctatcccaattgatgggttaggttagcatatgtcaccagttgagtaccgtactatccttcgatatcgtcttatgattccactttttcctattgatg 27337143  T
Q  417 aggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttta 458  Q
    ||||||| ||||||||||||||||| || ||| |||||||||    
T  27337142 aggtgtgccctgtttgtcgtaaggcatgtctggatactttta 27337101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 318 - 444
Target Start/End: Original strand, 25662876 - 25663002
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| ||| |||||| ||||||||||| |||| || |||||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  25662876 tagctatcccaattgatgggttgggtcagcatatgtcaccagtggaataccgtactatccttcgatatcgtcttatgattccactatttcctattgatga 25662975  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtg 444  Q
    |||||| | ||||||||||||||||||    
T  25662976 ggtgtgccttgtttgtcgtaaggcgtg 25663002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 3113725 - 3113864
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||||||||||||||  ||||||||| ||| ||||  | |||||||||||||||||||||||||| | |||||||||||| ||| | ||||||||||    
T  3113725 tagctatcccgattgatgatttaggtcagcataggtcattagtggagtatcgtactatccttagatattgccttatgattccactatctcctattgatga 3113824  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| ||| ||||||  ||||||| |||| ||||||||    
T  3113825 ggtgtgccctatttgtcacaaggcgtacctggatactttt 3113864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 457
Target Start/End: Original strand, 26212175 - 26212281
Alignment:
Q  351 tgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaa 450  Q
    |||||||| || |||||||||||  ||||||||||||  |||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |    
T  26212175 tgtcaccagtgaagtatcgtactgaccttagatatcgctttatgatttcattatttcctattgatgaagtgtgtcctgtttgtcgtaaggcgtgcctgga 26212274  T
Q  451 tactttt 457  Q
    |||||||    
T  26212275 tactttt 26212281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 317 - 439
Target Start/End: Original strand, 32269351 - 32269473
Alignment:
Q  317 ttagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatg 416  Q
    |||||||||| |||||||| |||||||||| |||||| || | || |||||  |||||||||| ||||| |||||||||||||| ||||| |||||||||    
T  32269351 ttagctatcctgattgatgggttaggtcaggatatgttactagtgaagtattatactatccttggatattgtcttatgattccactattttctattgatg 32269450  T
Q  417 aggtgtgtcctgtttgtcgtaag 439  Q
    |||| |||| ||| |||||||||    
T  32269451 aggtatgtcttgtgtgtcgtaag 32269473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 458
Target Start/End: Original strand, 6534122 - 6534262
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||||| |||||||| |||||||||| ||||||||||||| || || | || |||  |||||||| |    ||||||| |||||||  |||||||||    
T  6534122 tagctatcctgattgatgggttaggtcagcatatgtcaccaatcgaataccatattatttttagatattgcaaaatgattctattatttcttattgatga 6534221  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttta 458  Q
    |||||||| ||||||||||||||| || ||| |||||||||    
T  6534222 ggtgtgtcatgtttgtcgtaaggcatgtctggatactttta 6534262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 38446642 - 38446589
Alignment:
Q  390 ttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgt 443  Q
    ||||||||||||||||| | |||||||||||||| || ||||||||||||||||    
T  38446642 ttatgattccattattttccattgatgaggtgtgcccggtttgtcgtaaggcgt 38446589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 35310904 - 35310857
Alignment:
Q  410 attgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  35310904 attgatgaggtgtgccctgtttgttgtaaggcgtgtctgaatactttt 35310857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 27355295 - 27355390
Alignment:
Q  337 gttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttg 432  Q
    ||||||| || |||| |||||||| |||||  |||||| ||| |||||||   | |||||| |||||||| |||||||||||||||| ||| ||||    
T  27355295 gttaggttagcatatttcaccaatagagtactgtactaacctcagatatcacatcatgatttcattattttctattgatgaggtgtgccctatttg 27355390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 35456280 - 35456213
Alignment:
Q  348 atatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgat 415  Q
    ||||||||| || |||||| | |||||||||||||||||  |||||||||||| |||||  |||||||    
T  35456280 atatgtcacaaacggagtaccatactatccttagatatcaccttatgattccactattttatattgat 35456213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 13166542 - 13166607
Alignment:
Q  391 tatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatacttt 456  Q
    |||||||||| |||||   ||||||||||||||  |||||||| |||||||||| ||| |||||||    
T  13166542 tatgattccactatttctgattgatgaggtgtgctctgtttgttgtaaggcgtgtctggatacttt 13166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 52411461 - 52411600
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||||||||||| |||| ||||| ||||||||| | ||||||||||| |||||||||||||||| ||| |||||||||| ||| |||||||| |    
T  52411461 tagctatcccgattgatgagttaagtcagcatatgtcacgagtggagtatcgtgctatccttagatatcgccttgtgattccattgtttcctattgataa 52411560  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52411561 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 52411600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 53786256 - 53786117
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||| | |||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||| | ||||| ||||||||||    
T  53786256 tagctattctgattgatgggttaggtcagcatatgtcaccagtggagtatcgtattatccttagatatcgccttatgattcaactatttcctattgatga 53786157  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||  | |||||||||||||||||||||| ||||||||    
T  53786156 ggtgtaccttgtttgtcgtaaggcgtgcctggatactttt 53786117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 29862346 - 29862206
Alignment:
Q  318 tagctatcccgattgatgtgttag-gtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatg 416  Q
    |||||||| ||||||||| ||||  ||||| ||||||||||| || |||| |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  29862346 tagctatctcgattgatgggttaaagtcagcatatgtcaccagtgaagtagcgtactatccttagatatcgccttatgattccattatttcctattgatg 29862247  T
Q  417 aggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||   || ||| |||||||||||||||  ||||||||    
T  29862246 aggtgttctctatttatcgtaaggcgtgcctagatactttt 29862206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 7501728 - 7501836
Alignment:
Q  348 atatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcct 447  Q
    |||||||| || ||||||| |||||||||||||||||||| ||||| |||||  |||||  ||||||||||||||||  |||||||||||| ||||| ||    
T  7501728 atatgtcatcagtggagtaccgtactatccttagatatcgccttataattcctctatttcatattgatgaggtgtgt-ttgtttgtcgtaatgcgtgtct 7501826  T
Q  448 gaatactttt 457  Q
    | ||||||||    
T  7501827 ggatactttt 7501836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 35236656 - 35236571
Alignment:
Q  338 ttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtg 423  Q
    ||||||||| ||||||||||| ||||||| | ||||||||||||||||||  |||||||   ||||||| ||||||||||||||||    
T  35236656 ttaggtcagcatatgtcaccagtggagtaccatactatccttagatatcgctttatgatgttattatttcctattgatgaggtgtg 35236571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 49018500 - 49018418
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattcca 400  Q
    ||||||||| |||||||| ||||||||||   ||||||| | |||||||||| |||||| |||||||||| ||||||||||||    
T  49018500 tagctatcctgattgatgggttaggtcagcgcatgtcacaagtggagtatcgaactatcattagatatcgccttatgattcca 49018418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 43123637 - 43123569
Alignment:
Q  373 tatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggc 441  Q
    |||||| | ||||||||| || |||||||||||| |||||||||||| ||||| |||||||||||||||    
T  43123637 tatcctcatatatcgtctcattattccattattttctattgatgaggcgtgtcttgtttgtcgtaaggc 43123569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 52741121 - 52741188
Alignment:
Q  353 tcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggt 420  Q
    |||||| ||||||||| ||||||||||||||| | ||||||||||||| |||||  ||||||||||||    
T  52741121 tcaccagtggagtatcatactatccttagataccatcttatgattccactatttcatattgatgaggt 52741188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 37992809 - 37992743
Alignment:
Q  373 tatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaag 439  Q
    ||||||||||||||| ||||||||| || ||| |   ||||||||||||||  ||||||||||||||    
T  37992809 tatccttagatatcgccttatgatttcaatatatctaattgatgaggtgtgctctgtttgtcgtaag 37992743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 324 - 457
Target Start/End: Original strand, 4206161 - 4206294
Alignment:
Q  324 tcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtg 423  Q
    |||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||| ||| |||| ||||||| ||||| |||||||||||| |||    
T  4206161 tcccgattgatgggttaggtcagcatatgtcaccagtggagtaccgtactatccttagatctcgccttacgattccactatttcctattgatgaggcgtg 4206260  T
Q  424 tcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
     |||||||||||||||||||||||| ||||||||    
T  4206261 ccctgtttgtcgtaaggcgtgcctggatactttt 4206294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 322 - 457
Target Start/End: Original strand, 45232 - 45367
Alignment:
Q  322 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtg 421  Q
    |||||||||||||| |||||||||| |||||||| |  ||||||||| |||||||||||||||||  |||||||||||| ||||| ||||||||||||||    
T  45232 tatcccgattgatgggttaggtcagcatatgtcatctgtggagtatcatactatccttagatatcaccttatgattccaatatttcctattgatgaggtg 45331  T
Q  422 tgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    || |||||||||||||||| ||||||  ||||||||    
T  45332 tgccctgtttgtcgtaaggtgtgccttgatactttt 45367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 457
Target Start/End: Complemental strand, 34305041 - 34304906
Alignment:
Q  322 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtg 421  Q
    |||||| ||||||| |||| ||||| ||||||||||| ||||||| |||||||||||| ||||  ||||||||||||||||||||  ||||||||||||     
T  34305041 tatcccaattgatgggttatgtcagcatatgtcaccagtggagtaccgtactatccttcgatactgtcttatgattccattatttcatattgatgaggtt 34304942  T
Q  422 tgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    || |||  |||||||||| | || ||| ||||||||    
T  34304941 tgccctacttgtcgtaagacatgtctggatactttt 34304906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 318 - 455
Target Start/End: Original strand, 29337645 - 29337782
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||||| |||||||| |||||||||| |||| || | | || |||||| || ||||||||||||||| |||||||||||  ||||| ||||| ||||    
T  29337645 tagctatcctgattgatgggttaggtcagcatatttcgcaagtgaagtatcatattatccttagatatcgccttatgattcctctattttctattaatga 29337744  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactt 455  Q
    || ||| | ||||| ||||||||| |||||| ||||||    
T  29337745 ggcgtgccatgtttctcgtaaggcatgcctggatactt 29337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 32116194 - 32116098
Alignment:
Q  361 ggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| | |||||||| ||||||| |||||||||||| | ||||| |||||||||| ||||| |||||||||||||||| ||||||| ||||||||    
T  32116194 ggagtaccatactatccctagatattgtcttatgattcaactatttcctattgatgatgtgtgccctgtttgtcgtaaggtgtgcctggatactttt 32116098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 12401847 - 12401749
Alignment:
Q  345 agtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgt 443  Q
    |||| ||||||||| ||||||| |||| ||| ||||||||| ||||||||||| || ||||| ||||||||||| |||| |||||||| ||||||||||    
T  12401847 agtaaatgtcaccagtggagtaccgtattatgcttagatattgtcttatgattacactattttctattgatgagttgtgccctgtttgccgtaaggcgt 12401749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 318 - 422
Target Start/End: Original strand, 8374857 - 8374961
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||  ||||||| |||| | ||  ||||||||||||| ||||||||||||||||| | ||||||  |||||||||||||| || ||||||||||    
T  8374857 tagctatccttattgatgggttaagccaacatatgtcaccaatagagtatcgtactatcctcatatatcgcattatgattccattactttctattgatga 8374956  T
Q  418 ggtgt 422  Q
    |||||    
T  8374957 ggtgt 8374961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 457
Target Start/End: Complemental strand, 32120472 - 32120338
Alignment:
Q  322 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtg 421  Q
    |||| ||||||||| ||||| |||| | |||| |||||||||||  | ||| ||| ||| |||||| |||||||||||| ||||| |||||||| |||||    
T  32120472 tatctcgattgatg-gttagttcagcaaatgttaccaatggagtgccatacaatctttatatatcgccttatgattccaatatttcctattgatcaggtg 32120374  T
Q  422 tgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    || ||| |||||||||||| ||| ||| ||||||||    
T  32120373 tgccctatttgtcgtaaggtgtgtctggatactttt 32120338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 431
Target Start/End: Original strand, 23910852 - 23910962
Alignment:
Q  321 ctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggt 420  Q
    ||||||| ||||||| ||||||| || ||||||||||| |||| ||| ||||| || ||| |||||| ||||||||||||  |||| ||||| ||| |      
T  23910852 ctatcccaattgatgagttaggttagcatatgtcaccagtggaatattgtactctctttaaatatcgccttatgattccacaattttctattaatgtgag 23910951  T
Q  421 gtgtcctgttt 431  Q
    |||||||||||    
T  23910952 gtgtcctgttt 23910962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 422
Target Start/End: Original strand, 26225242 - 26225335
Alignment:
Q  329 attgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgt 422  Q
    ||||||| |||||||||  ||||||||| | | ||||| |||||||||||||||||||  |  |||||||||||||||  |||| |||||||||    
T  26225242 attgatgagttaggtcaacatatgtcacaagtagagtaccgtactatccttagatatcaccccatgattccattatttcttattaatgaggtgt 26225335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 357369 - 357415
Alignment:
Q  411 ttgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||||||||||||||| |||| ||||||||||| ||| ||||||||    
T  357369 ttgatgaggtgtgtcctttttgacgtaaggcgtgtctggatactttt 357415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 22986423 - 22986362
Alignment:
Q  362 gagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtg 423  Q
    ||||||| ||| ||||| |||||||| || ||||||||||||  | ||||||||||||||||    
T  22986423 gagtatcatacaatcctcagatatcgcctcatgattccattacatcctattgatgaggtgtg 22986362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 23801971 - 23802032
Alignment:
Q  362 gagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtg 423  Q
    ||||||| ||| ||||| |||||||| || ||||||||||||  | ||||||||||||||||    
T  23801971 gagtatcatacaatcctcagatatcgcctcatgattccattacatcctattgatgaggtgtg 23802032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 24125575 - 24125437
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||||||||||| |||||||||| ||||||||| | ||||||| ||||||||||||| ||||||  ||||||||||| ||||| ||||||||||    
T  24125575 tagctatcccgattgatgggttaggtcaggatatgtcac-agtggagtaccgtactatccttaaatatcgcattatgattccactatttcctattgatga 24125477  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| |||||||||||||||||||| ||| ||||||||    
T  24125476 ggtgtgccctgtttgtcgtaaggcgtgtctggatactttt 24125437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 39435215 - 39435076
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| |||||||||| ||||||||| | | ||||| |||||||||||| |||||||||||||||||||| | ||| ||||||||||    
T  39435215 tagctatcccaattgatgggttaggtcagcatatgtcactagttgagtaccgtactatccttcgatatcgtcttatgattccactttttcctattgatga 39435116  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| |||||||||||||||||||| ||| ||||||||    
T  39435115 ggtgtgccctgtttgtcgtaaggcgtgtctggatactttt 39435076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 500775 - 500636
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||| |||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| | |||| ||||||| ||||| ||||||||||    
T  500775 tagcaatcctgattgatgagttaggtcagcatatgtcaccaatggagtaccgtactatccttagatattgccttacgattccaatatttcctattgatga 500676  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| ||||||||| ||||||| |||||  ||||||||    
T  500675 ggtgtgacctgtttgttgtaaggcatgcctagatactttt 500636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 37517633 - 37517511
Alignment:
Q  322 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtg 421  Q
    |||||||||||||| |||||||||  ||||||||||| ||||||||| || ||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  37517633 tatcccgattgatgggttaggtcaacatatgtcaccagtggagtatcataatatccttagatatcgccttatgattccactatttcctattgatgaggtg 37517534  T
Q  422 tgtcctgtttgtcgtaaggcgtg 444  Q
    || ||||||| ||||||| ||||    
T  37517533 tgccctgtttatcgtaagacgtg 37517511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 457
Target Start/End: Original strand, 25021372 - 25021502
Alignment:
Q  329 attgatgtgttaggtcagtatatgtcaccaatggagtatcgtactat--ccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcc 426  Q
    ||||||| |||| ||||| | ||||||||| || ||||| |||||||  |||||||||||| || ||||||||| |||||  ||||||||||||||| |     
T  25021372 attgatgggttaagtcagcacatgtcaccagtgaagtatagtactatatccttagatatcgcctcatgattccactatttcatattgatgaggtgtgcca 25021471  T
Q  427 tgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    | ||| |||||||||||||||  ||||||||    
T  25021472 tatttatcgtaaggcgtgccttgatactttt 25021502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 318 - 439
Target Start/End: Original strand, 42921689 - 42921810
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||| ||| || || |||||||||| |||| |||  | ||||||||| ||||||  || ||||||||||||||||||||||||||  |||||||||    
T  42921689 tagctatctcgaatggtgggttaggtcagcatatatcataagtggagtatcatactattattcgatatcgtcttatgattccattatttcttattgatga 42921788  T
Q  418 ggtgtgtcctgtttgtcgtaag 439  Q
    |||| | |  ||||||||||||    
T  42921789 ggtgcgcctcgtttgtcgtaag 42921810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 4006999 - 4007104
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcg---tactatccttagatatcgtcttatgattccattatttactattga 414  Q
    ||||||||| |||||||| |||| ||||| ||||||||  | ||||| | ||   || |||||||||||||||||||||||||||| ||||| |||||||    
T  4006999 tagctatcctgattgatgggttaagtcagcatatgtcattagtggaggaccgccgtattatccttagatatcgtcttatgattccactattttctattga 4007098  T
Q  415 tgaggt 420  Q
    ||||||    
T  4007099 tgaggt 4007104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 441
Target Start/End: Complemental strand, 36006048 - 36005927
Alignment:
Q  319 agctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgag 418  Q
    ||||||||| ||| ||| |||||||||  ||||||||||| | ||||||  ||||||||| | |||| |  ||||||||| ||||||| |||||||||||    
T  36006048 agctatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaaatatggctttatgattctattatttcctattgatgag 36005949  T
Q  419 gtgtgtcctgtttgtcgtaaggc 441  Q
     |||| | | |||||||||||||    
T  36005948 atgtg-catttttgtcgtaaggc 36005927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 459
Target Start/End: Complemental strand, 10190079 - 10189950
Alignment:
Q  330 ttgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgt 429  Q
    |||||| ||||||| || |||| ||| || |||||||||||| ||||   |||||| |||||||||||| |||||||  |||||||||  ||   || ||    
T  10190079 ttgatgagttaggtaagcatatatcatcagtggagtatcgtaatatctgcagatattgtcttatgattctattatttcatattgatgacatgcaccccgt 10189980  T
Q  430 ttgtcgtaaggcgtgcctgaatacttttaa 459  Q
    ||| ||||||| ||||||| ||||||||||    
T  10189979 ttgccgtaaggtgtgcctggatacttttaa 10189950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 10556106 - 10556175
Alignment:
Q  337 gttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattattt 406  Q
    ||||||||| |||||||||||  || | |||| || |||||||| ||||||||||||||||||| |||||    
T  10556106 gttaggtcaatatatgtcaccggtgaattatcatattatccttaaatatcgtcttatgattccactattt 10556175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 318 - 458
Target Start/End: Original strand, 28040686 - 28040826
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||||||||||  |||||||||  ||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||     
T  28040686 tagctatcccgattgattggttaggtcaacatatgtcaccagtggagtatcatactatccttagatatcgccttatgattccattatttcctaatgatgt 28040785  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttta 458  Q
    |||||| |||||||| ||||| | ||| |||||||||||||    
T  28040786 ggtgtgccctgtttgccgtaatgtgtgactgaatactttta 28040826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 423
Target Start/End: Complemental strand, 19035975 - 19035870
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||||||||||| |||||||||  ||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||| | || |||||||    
T  19035975 tagctatcccgattgatgagttaggtcaacatatgtcaccagtggagtatcatactatccttagatatcgccttatgattccactatatccttttgatga 19035876  T
Q  418 ggtgtg 423  Q
    ||||||    
T  19035875 ggtgtg 19035870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 457
Target Start/End: Complemental strand, 37200789 - 37200664
Alignment:
Q  332 gatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgttt 431  Q
    |||| |||||||||| ||||||||| | ||||||||| |||||||||||||||||| ||||| |||||| ||||| |||||||||||||||| |||  ||    
T  37200789 gatgggttaggtcagcatatgtcactagtggagtatcatactatccttagatatcgccttataattccactatttcctattgatgaggtgtgccctactt 37200690  T
Q  432 gtcgtaaggcgtgcctgaatactttt 457  Q
    || ||||| ||||| || ||||||||    
T  37200689 gttgtaagacgtgcttggatactttt 37200664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 34645114 - 34644975
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||  ||||||| || || |||| ||||||||| | || |||| |||| ||||||| |||||||||||||||||||| ||||| ||| ||||||    
T  34645114 tagctatcctaattgatgggtaagatcagcatatgtcactagtgaagtaccgtattatccttcgatatcgtcttatgattccactattttctagtgatga 34645015  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    || ||| |||||||||| ||||||||| ||| ||||||||    
T  34645014 ggagtgccctgtttgtcataaggcgtgtctggatactttt 34644975  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 38732131 - 38731992
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    ||||||||| ||| |||| |||  ||||| |||||||| || ||||||| |||||||||||||||||||| |||||||||||| ||||| || |||||||    
T  38732131 tagctatcctgatggatgggttgtgtcagcatatgtcatcagtggagtaccgtactatccttagatatcgccttatgattccactatttcctgttgatga 38732032  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
     || |||  ||||| |||||||| ||||||| ||||||||    
T  38732031 tgtatgttttgtttttcgtaaggtgtgcctggatactttt 38731992  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 318 - 457
Target Start/End: Original strand, 7794474 - 7794613
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||  ||||||| |||||||||  |||| |||||| ||||||| | | |||||||| ||||||| ||||||||||||||||||  ||||||| |    
T  7794474 tagctatccttattgatgggttaggtcaacatatatcaccagtggagtaccatgctatcctttgatatcgccttatgattccattatttcatattgataa 7794573  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    ||||   | |||||||||||||||||| ||| ||||||||    
T  7794574 ggtgcaccttgtttgtcgtaaggcgtgtctggatactttt 7794613  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 441
Target Start/End: Complemental strand, 15585409 - 15585285
Alignment:
Q  317 ttagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatg 416  Q
    ||||||||||| ||||||| |||||| ||  ||||||||||| | |||||| |||||||| | |  |||||||| |||||| | |||||| | |||||||    
T  15585409 ttagctatccctattgatgggttaggccaaaatatgtcaccagtagagtattgtactatcatcaagtatcgtctcatgatttctttattttccattgatg 15585310  T
Q  417 aggtgtgtcctgtttgtcgtaaggc 441  Q
    || | || ||||||||| |||||||    
T  15585309 agatttgccctgtttgttgtaaggc 15585285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 22375224 - 22375128
Alignment:
Q  361 ggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| |||||||||||||||||||| |||||||||| | ||||| ||| ||||||||| |  | |||||| | ||||||||||||| ||| ||||    
T  22375224 ggagtaacgtactatccttagatatcgccttatgattctactatttcctactgatgaggttttccatgtttggcttaaggcgtgcctgtatagtttt 22375128  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 444
Target Start/End: Original strand, 37917657 - 37917779
Alignment:
Q  322 tatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtg 421  Q
    |||||| ||||||| |||||| ||| ||||||||| | | ||||| |||||||| || |||||||| || | |||||||||||    | |||||||||||    
T  37917657 tatccctattgatgggttaggccagaatatgtcactagtagagtaccgtactattctcagatatcgcctcaagattccattataacatgttgatgaggtg 37917756  T
Q  422 tgtcctgtttgtcgtaaggcgtg 444  Q
    ||  ||||||||||||| |||||    
T  37917757 tgctctgtttgtcgtaaagcgtg 37917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 22347340 - 22347288
Alignment:
Q  403 atttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactt 455  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||| ||||||    
T  22347340 attttctattgatgaggtgtgccctgtttgtcgtaaggcatgcctggatactt 22347288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 35386927 - 35387002
Alignment:
Q  370 tactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgc 445  Q
    |||||| ||||||||||| ||||| ||| || |||||  |||||||||||  ||||||||||||||||||| ||||    
T  35386927 tactattcttagatatcgacttataatttcactattttttattgatgaggcatgtcctgtttgtcgtaaggtgtgc 35387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 53171046 - 53170907
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||  ||||||| ||||| |||| |||| ||| || ||||||||||||||||| |||||||||  |||| ||||||| ||||| ||||||||||    
T  53171046 tagctatcctaattgatgggttagttcagcatatatcatcagtggagtatcgtactatctttagatatcaccttacgattccactattttctattgatga 53170947  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  53170946 ggtgtgccctgtttgtcgtaaggcgtgcctgaatactttt 53170907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 318 - 457
Target Start/End: Complemental strand, 16958083 - 16957945
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||  ||||||| || ||| ||| ||||||||||| |||| ||  ||||||||||||||||| | |||||||||||| ||||| ||||||||||    
T  16958083 tagctatcctcattgatgggtaaggccagcatatgtcaccagtggattactgtactatccttagatat-gccttatgattccactattttctattgatga 16957985  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||| | |||||||||||||||||||||  ||||||||    
T  16957984 ggtgtgccttgtttgtcgtaaggcgtgcctagatactttt 16957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 337 - 448
Target Start/End: Original strand, 56461692 - 56461803
Alignment:
Q  337 gttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgt 436  Q
    |||||||||  |||| |||||||||||||||||||| ||||||||||||   |||||||||||| ||||| |||||||||||||||| ||||||| ||||    
T  56461692 gttaggtcatcatatatcaccaatggagtatcgtaccatccttagatataaccttatgattccactattttctattgatgaggtgtgccctgtttttcgt 56461791  T
Q  437 aaggcgtgcctg 448  Q
    |||| |||||||    
T  56461792 aaggtgtgcctg 56461803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 318 - 431
Target Start/End: Original strand, 48505757 - 48505870
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||  ||||||| ||||| |||  |||||| | |  |||||||||||| ||||||||||||||| |||||||||||| |||||  |||||||||    
T  48505757 tagctatccatattgatgggttagatcaacatatgttatcggtggagtatcgtattatccttagatatcgccttatgattccactatttcatattgatga 48505856  T
Q  418 ggtgtgtcctgttt 431  Q
     |||||| ||||||    
T  48505857 tgtgtgttctgttt 48505870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 12917995 - 12918064
Alignment:
Q  388 tcttatgattccattatttactattgatgaggtgtgtcctgtttgtcgtaaggcgtgcctgaatactttt 457  Q
    |||||||||| || ||||| ||||||||||| |||| | |||||||||||||| ||| ||| ||||||||    
T  12917995 tcttatgatttcactattttctattgatgagatgtgccatgtttgtcgtaaggtgtgtctggatactttt 12918064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 411
Target Start/End: Complemental strand, 32335399 - 32335307
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactat 411  Q
    |||||||||| |||||||  ||||||||  ||||||||  | ||||||| | ||||||| |||||||||| | |||||||||| ||||| ||||    
T  32335399 tagctatccctattgatggattaggtcatcatatgtcattagtggagtaccatactatc-ttagatatcgccgtatgattccaatatttcctat 32335307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 318 - 454
Target Start/End: Complemental strand, 20269 - 20133
Alignment:
Q  318 tagctatcccgattgatgtgttaggtcagtatatgtcaccaatggagtatcgtactatccttagatatcgtcttatgattccattatttactattgatga 417  Q
    |||||||||| ||||||| |||||||||  |||||||| || |||||||| || |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  20269 tagctatcccaattgatgggttaggtcaacatatgtcaacattggagtatggtgctatccttagatatcaccttatgattacattatttcctattgatga 20170  T
Q  418 ggtgtgtcctgtttgtcgtaaggcgtgcctgaatact 454  Q
    |||||| ||| |||||| ||||||||||||| |||||    
T  20169 ggtgtgccctttttgtcataaggcgtgcctggatact 20133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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