View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_14 (Length: 454)
Name: NF8508_low_14
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 49694661 - 49695087
Alignment:
| Q |
19 |
atctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcattctccaaaccatctctggaatactgc |
118 |
Q |
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| T |
49694661 |
atctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcattctccaaaccatctctggaatactgc |
49694760 |
T |
|
| Q |
119 |
gacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctattcttattccaataccttctccatcaatggaaacatcggaacctgaat |
218 |
Q |
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| T |
49694761 |
gacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctactcttattccaataccttctccatcaatggaaacatcggaacctgaat |
49694860 |
T |
|
| Q |
219 |
cagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacattcatgatttcaccaccatcttcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49694861 |
cagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacattcatgatttcaccaccatcttcttc |
49694960 |
T |
|
| Q |
319 |
gtcatcatcttcgttttcttcttcgtcgtcgtaagtagacaaatgagcgaagggagtaacacgcagaggcacttgttcgagaaggggaagttcttcgtca |
418 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49694961 |
gtcatcatcttcgttttcctcttcgtcgtcgtaagtagacaaatgagcgaagggagtaacacgcagaggcacttgttcgagaaggggaagttcttcgtca |
49695060 |
T |
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| Q |
419 |
agttcaaaacactcttcttcttcatct |
445 |
Q |
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| T |
49695061 |
agttcaaaacactcttcttcttcatct |
49695087 |
T |
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