View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_low_15 (Length: 434)
Name: NF8508_low_15
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 6185197 - 6184781
Alignment:
| Q |
1 |
ttcagatattgttatattagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185197 |
ttcagatattgttatattagatgacaattttgcatctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaattt |
6185098 |
T |
|
| Q |
101 |
caactaacagtgaatgtggcagcacttgttatcaatttcgtagccgcggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185097 |
caactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtttcagccggtgaagtaccattaacagcagttcaattattatgggtgaatt |
6184998 |
T |
|
| Q |
201 |
taattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggatgaaaaaccagttggtagaacaaagcctcttattac |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6184997 |
tgattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggatgaaaaaccagttggtagaacaaagcctcttattac |
6184898 |
T |
|
| Q |
301 |
taacattatgtggaggaatcttgtgtcacaagctttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6184897 |
taacattatgtggaggaatcttgtgtcacaagctttgtaccaaataataattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatca |
6184798 |
T |
|
| Q |
401 |
aaggtaaatgacacatt |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6184797 |
aaggtaaatgacacatt |
6184781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 4236073 - 4235657
Alignment:
| Q |
1 |
ttcagatattgttatattagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236073 |
ttcagatattgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaattt |
4235974 |
T |
|
| Q |
101 |
caactaacagtgaatgtggcagcacttgttatcaatttcgtagccgcggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||| || || ||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
4235973 |
caattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatgggtgaatt |
4235874 |
T |
|
| Q |
201 |
taattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggatgaaaaaccagttggtagaacaaagcctcttattac |
300 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||| || |
|
|
| T |
4235873 |
tgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtagaacaaagcctcttataac |
4235774 |
T |
|
| Q |
301 |
taacattatgtggaggaatcttgtgtcacaagctttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatca |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||| || |
|
|
| T |
4235773 |
taacattatgtggaggaatcttttgtcacaagctttgtaccaaatagtaattttattaactcttcagtttaaaggtgagagtatttttggtgtgacttcg |
4235674 |
T |
|
| Q |
401 |
aaggtaaatgacacatt |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4235673 |
aaggtaaatgacacatt |
4235657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 166 - 417
Target Start/End: Original strand, 30441398 - 30441650
Alignment:
| Q |
166 |
accattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggat |
265 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30441398 |
accattaatatcagttcaattattatgggtgaatttgattatggatacattagatgctttggctcttgcaactgaaaaacctactaaggaactaatggat |
30441497 |
T |
|
| Q |
266 |
gaaaaacca-gttggtagaacaaagcctcttattactaacattatgtggaggaatcttgtgtcacaagctttgtaccaaatagtaattttgttaactctt |
364 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| | ||||| || |||||||||| |||||||||| ||||| |||||| ||||||||| ||| || |
|
|
| T |
30441498 |
aaaaaaaattgttggtagaataaagcctcttattacaagcattacgtagaggaatcttatgtcacaagccttgtatcaaatatcaattttgttgactttt |
30441597 |
T |
|
| Q |
365 |
caattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgacacatt |
417 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
30441598 |
caattcaaaggtgacaataattttggtgtgacattaaaggtaaatgacacatt |
30441650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 19592955 - 19592829
Alignment:
| Q |
2 |
tcagatattgttatattagatgacaattttgcatctatagtaacagttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19592955 |
tcagatattgttatattagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt-- |
19592858 |
T |
|
| Q |
102 |
aactaacagtgaatgtggcagcacttgttatcaatt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19592857 |
-------agtgaatgtggcagcacttgttatcaatt |
19592829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 262
Target Start/End: Complemental strand, 38356971 - 38356756
Alignment:
| Q |
47 |
gttttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaactaacagtgaatgtggcagcacttgttatcaatttcgtagccg |
146 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| || || || | || | |
|
|
| T |
38356971 |
gttttaaggtggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaactttattgcag |
38356872 |
T |
|
| Q |
147 |
cggtttcagccggcgaagtaccattaacagcagttcaattattatgggtgaatttaattatggatacattaggtgctttggctcttgcaactgaaaaacc |
246 |
Q |
| |
|
| ||||| | || || || || |||||| |||||||| | | ||||||||| | |||||||||||| ||||||||||||| || ||||| |||| || |
|
|
| T |
38356871 |
cagtttcttctggtgatgttcccttaacaacagttcaacttctttgggtgaatctcattatggatacactaggtgctttggcactagcaacagaaaggcc |
38356772 |
T |
|
| Q |
247 |
tactaaggaattaatg |
262 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
38356771 |
tacaaaggagttaatg |
38356756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 417
Target Start/End: Complemental strand, 19592771 - 19592681
Alignment:
| Q |
327 |
cacaagctttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgacacatt |
417 |
Q |
| |
|
||||||| |||||||||||| |||| |||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
19592771 |
cacaagccttgtaccaaataccaattatgttgacttttcaattcaaaggtgacaataattttggtgtgacactaaaggtaaacgacacatt |
19592681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 19592824 - 19592786
Alignment:
| Q |
161 |
gaagtaccattaacagcagttcaattattatgggtgaat |
199 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
19592824 |
gaagtaccattaataacagttcaattattatgggtgaat |
19592786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 29475752 - 29475837
Alignment:
| Q |
328 |
acaagctttgtaccaaatagtaattttgttaactcttcaattcaaaggtgaggatatttttggtgtgacatcaaaggtaaatgaca |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
29475752 |
acaagctttgttccaaatagtaattttgttaactcttcaatttaaaggtgatattatttttggtatgacatcaaaggtaaatgaca |
29475837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University