View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_low_16 (Length: 420)
Name: NF8508_low_16
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 124 - 406
Target Start/End: Complemental strand, 39219882 - 39219600
Alignment:
| Q |
124 |
aaactaagcttatgttccaatgtagactgaaagaaattacatcggggaaaatatctcgcattacaaaacttagctataagtcaacatgaatttgtcataa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39219882 |
aaactaagcttatgttccaatgtagactgaaagaaattacatcggggaaaatatctcgcattataaaacttagctataactcaacatgaatttgtcataa |
39219783 |
T |
|
| Q |
224 |
ttcttcaacattgtttgcttaacattgtttttgtacatagacaacttgtcacgagaaagccaattaattcctctattttaagcttttgaatgtccccatc |
323 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39219782 |
ttctttaacattgtttgcttaacattgtttttgtacatagacaacttgtcgcgagaaagccaattaattcctctattttaagcttttgaatgtccccacc |
39219683 |
T |
|
| Q |
324 |
aaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtgaataaactcgtcaaataaataggaatagat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
39219682 |
aaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtgaataaactcgtgaaataagtaggaatagat |
39219600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 39220015 - 39219915
Alignment:
| Q |
24 |
agccatatcagaaaaaagaattacatcactcgtaattcaactattatttcaaaccagaatatccacatcatcacttatcatccacccacttcatgctagg |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
39220015 |
agccatatgagaaaaaagaattacatcactcgtaatttaactattatttcaaaccagaatatccacatcatcacctatcttccacccactttatgctagg |
39219916 |
T |
|
| Q |
124 |
a |
124 |
Q |
| |
|
| |
|
|
| T |
39219915 |
a |
39219915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 406
Target Start/End: Complemental strand, 15026161 - 15026032
Alignment:
| Q |
277 |
agaaagccaattaattcctctattttaagcttttgaatgtccccatcaaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtg |
376 |
Q |
| |
|
||||||||| ||||| |||||| ||| | || ||||| ||||| |||||||||||||||| |||||||| | ||||||||||| |||| | |||| |
|
|
| T |
15026161 |
agaaagccagttaatacctctactttgacctcccgaatgaccccaccaaaaggaattcatcattctttcaattccatcacaaagagagacaaggagagtg |
15026062 |
T |
|
| Q |
377 |
aataaactcgtcaaataaataggaatagat |
406 |
Q |
| |
|
|| |||||| | ||||| |||| |||||| |
|
|
| T |
15026061 |
aacaaactcataaaataggtagggatagat |
15026032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 45707052 - 45707152
Alignment:
| Q |
279 |
aaagccaattaattcctctattttaagcttttgaatgtccccatcaaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtgaa |
378 |
Q |
| |
|
|||| |||||||||||||||||| | || |||||||||||| | |||||||||| || ||||||||| | ||| ||||||||||| ||||| |||| |
|
|
| T |
45707052 |
aaagacaattaattcctctatttaga-ctcatgaatgtccccactagaaggaattcaccatcctttcaatttattcctaaagagatacacacaaaatgaa |
45707150 |
T |
|
| Q |
379 |
ta |
380 |
Q |
| |
|
|| |
|
|
| T |
45707151 |
ta |
45707152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 363
Target Start/End: Original strand, 19111818 - 19111930
Alignment:
| Q |
251 |
tttttgtacatagacaacttgtcacgagaaagccaattaattcctctattttaagcttttgaatgtccccatcaaaaggaattcatcaccctttcaatct |
350 |
Q |
| |
|
||||||| |||||| ||| |||| | |||| ||||| || ||| |||||| |||| |||||| ||||| || || |||||||||| | ||||||||| |
|
|
| T |
19111818 |
tttttgtgcatagataacctgtcccatgaaatccaatggatacctttattttgagctcctgaatgaccccagcagaatgaattcatcatcttttcaatct |
19111917 |
T |
|
| Q |
351 |
cttcacaaagaga |
363 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
19111918 |
catcacaaagaga |
19111930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University