View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_17 (Length: 408)
Name: NF8508_low_17
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 207 - 391
Target Start/End: Complemental strand, 49297479 - 49297294
Alignment:
| Q |
207 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaa-aaaata |
305 |
Q |
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| T |
49297479 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaaaaaaata |
49297380 |
T |
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| Q |
306 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttat |
391 |
Q |
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| T |
49297379 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttat |
49297294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 49298046 - 49297857
Alignment:
| Q |
21 |
aggaacatttggcaccgtatgtgggaagagaaagaatcttcccactaatttctcatcatttgagaacatatgatacgatccacatctagtggcaaacgtg |
120 |
Q |
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| T |
49298046 |
aggaacatttggcaccgtatgtgggaagagaaagaatcttctcactgatttctcatcatttgagaacatatgatacgatccacatccagtggcaaacgtg |
49297947 |
T |
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| Q |
121 |
gggaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaagtgcaaatacgtagaaacttcgttgagacacgctttcaac |
210 |
Q |
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| T |
49297946 |
aagaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaagtgcaaatacgtagaaacttcggtgagacacgctttcaac |
49297857 |
T |
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