View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_19 (Length: 398)
Name: NF8508_low_19
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 11104041 - 11103668
Alignment:
| Q |
17 |
catttctagtatattttgattttaatccgtgatagttttttatttaaattcagtctttacgaatattataattgttcttagagtctctggcccaataatt |
116 |
Q |
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| T |
11104041 |
catttctagtatatttttattttaatacgtgatagttttttatttaaatttagtctttacgaatattataattgttcttagagtctgtggcccaataatt |
11103942 |
T |
|
| Q |
117 |
aaaatcatgtcttaggatccaataagttaacgttgggagttaaaaatgctataatgcattgactaaa-tcatatttaaatctaaattttatttgaagtgt |
215 |
Q |
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| T |
11103941 |
aaaatcatgtcttaggatccaataagttaacgttgggagttaaaaatgctataatgcattgactaaaatcatatttaaatctttattttatttgaagtgt |
11103842 |
T |
|
| Q |
216 |
atcggtatagttgattattgaattccactgaaaatcttatagacgacatgagagcattcattttttccttgcaaacatgattaggcttcttttataatag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11103841 |
atcggtatagttgattattgaattccactgaaaatcttatagacgacataagagcattcattttttccttgcaaacatgattaggcttcttttatcatag |
11103742 |
T |
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| Q |
316 |
acgaattaaggaatcgatcgaacctatatttcttctttggtaaagaactttggctactaactttttcaacacca |
389 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11103741 |
acgaattaaggaatagatcgaacctatatttcttctttggtaaagaactttggctactaactttttcaacacca |
11103668 |
T |
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