View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_low_2 (Length: 703)
Name: NF8508_low_2
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_2 |
 | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 12 - 685
Target Start/End: Complemental strand, 43744065 - 43743383
Alignment:
| Q |
12 |
atggacatcacaagggtagtagcacaagtcttttcaacaactcaaatattcatgaaagttacaacactgcgatcacttacaacatcaaggcgatacatgt |
111 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43744065 |
atggccatcgcaagggtagtagcacaagtcttttcaacaactcaaatattcatgaaagttacaacactgcgatcacttacaacatcaaggggatacatgt |
43743966 |
T |
|
| Q |
112 |
tgcaacagccaaatcttacttgcctatataagtagctccccagctctaagcaaagtacaacaattgacaaacttacaggtgacatttcacatggaaaagg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
43743965 |
tgcaacagccaaatcttacttgcctatataagtagccccccagctctaagcaaagtacaacaattgacaaacttacaggtgacatttcacatgggaaagg |
43743866 |
T |
|
| Q |
212 |
tgaattctttcccaacatgggaaacnnnnnnnnaacaatcagattaaaagggaacactgatcttactataggttgtctacactgtatattctttcttcat |
311 |
Q |
| |
|
||||| |||||||| |||||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43743865 |
tgaatcctttcccaccatgggaaacttttttttaaccatcagatttaaagggaacattgatcttactataggttgtctacaatgtatattctttcttcat |
43743766 |
T |
|
| Q |
312 |
caacctcttagtgtcattcacggcttagctttcactttcattgtcttcaacctccgt---------tttatttcaatgaagaagaataataaccaataaa |
402 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
43743765 |
caagctcttagtgtcattcacggcttaactttcacttttattgccttcaacctccgtctatggaattttatttcaatgaagaagaacaataaccaataaa |
43743666 |
T |
|
| Q |
403 |
tcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgacgaacaagttcatggcatttaaaattggtttttgtagcatgctcta |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43743665 |
tcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgatgaacaagttcatggcatttaaaattggtttttgtagcatgctcta |
43743566 |
T |
|
| Q |
503 |
aaaatgaagaaaataacaaatatctgccagacccagatcagaaaacaaagaaaaatgaaggaaaatgaataagaaatatagttgtaacaagtacagaaat |
602 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
43743565 |
aaaatgaagaaaataacaaagatctgccagactcatatcagaaaacaaagaaaaatgaaggaaaaggaataagaaatatagttgtaacaaggacagaaag |
43743466 |
T |
|
| Q |
603 |
agtaaatctaattgtaacaaggaacactctgtatcatctcctataatgcttgcaactaaattcaaatacccacaaaattaaaa |
685 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
43743465 |
agtaaatctaattgtaacaaggaacactctgcatcatctcctataatgcttgcaactaaaatcaaatacccacaaaattaaaa |
43743383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 249 - 685
Target Start/End: Original strand, 32079080 - 32079522
Alignment:
| Q |
249 |
atcagattaaaagggaacactgatcttactataggttgtctacactgtatattctttcttcatcaacctcttagtgtcattcacggcttagctttcactt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32079080 |
atcagattaaaagggaacactgatcttactataggttgt--acattgtatattctttcttcatcaacctcttagtgtcattcacggcttagctttcactt |
32079177 |
T |
|
| Q |
349 |
tcattgtcttcaacctccgt---------tttatttcaatgaagaagaataataaccaataaatcataaaaataacaaattaagggtaccgttattcata |
439 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
32079178 |
tcattgtcttcaacctccgtctatggaattttatttgaatgatgaagaacaataaccaataaatcatgaaaataacaaattaagggtaca-ttattcata |
32079276 |
T |
|
| Q |
440 |
cttgctcaacatctcgacgaacaagttcatggcatttaaaattggtttttgtagcatgctctaaaaatgaagaaaataacaaatatctgccagacccaga |
539 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
32079277 |
cttgctcaacatctcgttgaacaagttcatggcatttaaaattggtttttgcagcatgctctaaaaatgaagaaaataacaaagattcgccagacccaga |
32079376 |
T |
|
| Q |
540 |
tcagaaaacaaagaaaaatgaaggaaaatgaataagaaatatagttgtaacaagtacagaaatagtaaatctaattgtaacaaggaacactctgtatcat |
639 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| ||||| |||||| ||| ||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32079377 |
tcagaaaacaaaggaaaatgaaggaaaaggaataagaaataaagttgcaacaaggacataaagagtaaatctaattgtaacaaggaacactctgcatcat |
32079476 |
T |
|
| Q |
640 |
ctcctataatgcttgcaactaaattcaaatacccacaaaattaaaa |
685 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32079477 |
ctcctataatgcttgcaactaaaatcaaatacccacaaaattaaaa |
32079522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 293 - 685
Target Start/End: Original strand, 11334451 - 11334849
Alignment:
| Q |
293 |
ctgtatattctttcttcatcaacctcttagtgtcattcacggcttagctttcactttcattgtcttcaacctccgt---------tttatttcaatgaag |
383 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11334451 |
ctgtatattctttcttcatcaacctctgagtgtcattcacggcttagctttcactttcattgtcttcaacctccgtctatggaattttatttcaatgaag |
11334550 |
T |
|
| Q |
384 |
aagaataataaccaataaatcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgacgaacaagttcatggcatttaaaattg |
483 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11334551 |
aacaata---accaataaatcataaaaataacaaattaagggtaccgttattcatacttgctcaacatctcgatgaacaagttcatggcatttaaaattg |
11334647 |
T |
|
| Q |
484 |
gtttttgtagcatgctctaaaaatgaagaaaataacaaatatctgccagacccagatcagaaaacaaagaaaaatgaaggaaaatgaataagaaatatag |
583 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11334648 |
gtttttgcagcatgctctaaaaatgaagaaaataacaaagatccgccagacccagatcagaaaacaaagaaaaatgaaggaaaaggaataagaaatatag |
11334747 |
T |
|
| Q |
584 |
ttgtaacaagtacagaaatagtaaatctaattgtaacaaggaacactctgtatcatctcctataatgcttgcaactaaattcaaatacccacaaaattaa |
683 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11334748 |
ttgtaacaaggacagaaagagtaaatctaattataacaaggaacactctgcatcatcttctataatgcttgcaactaaaatcaaatacccacaaaattaa |
11334847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 11334323 - 11334452
Alignment:
| Q |
190 |
gtgacatttcacatggaaaaggtgaattctttcccaacatgggaaacnnnnnnnnaacaatcagattaaaagggaacactgatcttactataggttgtct |
289 |
Q |
| |
|
||||||||||| || | |||||||||| |||||||| ||||||||| ||| || |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11334323 |
gtgacatttcatataggaaaggtgaatcctttcccactatgggaaacttttttttaaccattagattaaaagggaacactaatcttactataggttgtct |
11334422 |
T |
|
| Q |
290 |
acactgtatattctttcttcatcaacctct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11334423 |
acactgtatattctttcttcatcaacctct |
11334452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 198216 - 198271
Alignment:
| Q |
252 |
agattaaaagggaacactgatcttactataggttgtctacactgtatattctttct |
307 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
198216 |
agattaaaagggaatactgatcttattataggttgtctacactgtatattttttct |
198271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 50687795 - 50687748
Alignment:
| Q |
188 |
aggtgacatttcacatggaaaaggtgaattctttcccaacatgggaaa |
235 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
50687795 |
aggtgacatttcacatgggaaaggttaattctttcccaccatgggaaa |
50687748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 23283933 - 23283883
Alignment:
| Q |
184 |
ttacaggtgacatttcacatggaaaaggtgaattctttcccaacatgggaa |
234 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||| |||||||| |
|
|
| T |
23283933 |
ttacaggtgacatttcacatgggaaaggggaatcctttcccaccatgggaa |
23283883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 15320 - 15273
Alignment:
| Q |
188 |
aggtgacatttcacatggaaaaggtgaattctttcccaacatgggaaa |
235 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
15320 |
aggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaa |
15273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 1403039 - 1403086
Alignment:
| Q |
188 |
aggtgacatttcacatggaaaaggtgaattctttcccaacatgggaaa |
235 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
1403039 |
aggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaa |
1403086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 43350967 - 43351014
Alignment:
| Q |
188 |
aggtgacatttcacatggaaaaggtgaattctttcccaacatgggaaa |
235 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
43350967 |
aggtgtcatttaacatggaaaaggtgaatcctttcccatcatgggaaa |
43351014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 1741830 - 1741776
Alignment:
| Q |
253 |
gattaaaagggaacactgatcttactataggttgtctacactgtatattctttct |
307 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
1741830 |
gattgaaaggaaacaatgatcttactataagttgtctacactatatattttttct |
1741776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 35237259 - 35237305
Alignment:
| Q |
189 |
ggtgacatttcacatggaaaaggtgaattctttcccaacatgggaaa |
235 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||| ||||||||| |
|
|
| T |
35237259 |
ggtgacatttcacatgggaaaggttaatcctttcccaccatgggaaa |
35237305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 39149517 - 39149471
Alignment:
| Q |
189 |
ggtgacatttcacatggaaaaggtgaattctttcccaacatgggaaa |
235 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
39149517 |
ggtggcatttcacatgggaaaggtgaatcctttcccaccatgggaaa |
39149471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 14615963 - 14616000
Alignment:
| Q |
263 |
gaacactgatcttactataggttgtctacactgtatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
14615963 |
gaacactgatcttactataggttgtccacaccgtatat |
14616000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 2458339 - 2458269
Alignment:
| Q |
252 |
agattaaaagggaacactgatcttactataggttgtctacactgtatattctttct---tcatcaacctct |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||| ||| || ||||| |||||||||||| |
|
|
| T |
2458339 |
agattaaaagggaacattgatcttactatagactgtccacactatatgttttttctctgtcatcaacctct |
2458269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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