View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_20 (Length: 395)
Name: NF8508_low_20
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 203 - 380
Target Start/End: Original strand, 8083559 - 8083743
Alignment:
| Q |
203 |
aagaagtgtatgtaacagaatccatagcacatacgaaaaatgcatgaaaggacaaccaaacagaaaaatgtggaga-ggactaacgtgtctttctccctc |
301 |
Q |
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| T |
8083559 |
aagaagtgtatgtaacagaatccatagcacatacgaaaaatgcatgaaaggacaaccaaacagaaaaatgtggagagggactaacgtgtctttctccctt |
8083658 |
T |
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| Q |
302 |
caaaatttcaaatttatttgtgaatttgatc-----tcaggtacccg-caaacaaagggataaggtacatgataaaaacttaagt |
380 |
Q |
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| T |
8083659 |
caaaatttcaaatttatttgtgaatttgatctctcttcaggtacccgacaaacaaagggataaggtacatgacaaaaatttaagt |
8083743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 8083277 - 8083391
Alignment:
| Q |
97 |
ggaatagtttcaacatttgttgtgcctaatatgtaaggtggaattgaagaagcgagtgctaaaagagcgaggtattgcatttgttggtgaaatgaaatag |
196 |
Q |
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| T |
8083277 |
ggaatagtttcaacatttgttgtgcctaatatgtaaggtggaattgaagaagcgagtgctaaaagagcgaggtattgcatttgttggtgaaatgaaatag |
8083376 |
T |
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| Q |
197 |
cagtgaaagaagtgt |
211 |
Q |
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| T |
8083377 |
cagtgaaagaagtgt |
8083391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 8083060 - 8083134
Alignment:
| Q |
24 |
taatacaagatttaactgccaaatgaaaaataattaaagaaaaaggaaatttaaactagtatgaattattaatgg |
98 |
Q |
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| T |
8083060 |
taatacaagatttaactgccaaatgaaaaataattaaagaaaaaggaaatttaaactagtatgaattattaatgg |
8083134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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