View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_21 (Length: 391)
Name: NF8508_low_21
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 171 - 375
Target Start/End: Original strand, 1658964 - 1659168
Alignment:
| Q |
171 |
agttaaagattatttgggacgaattagagagttattgtcatctccctacttgtacgtgccatcatcagtgccaatgtttagctatgcataatcctaagga |
270 |
Q |
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| T |
1658964 |
agttaaagattatttgggacgaattagaaagttattgtcatctccctacttgtacgtgccatcatcagtgccaatgtttagctatgcctaatcctaagga |
1659063 |
T |
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| Q |
271 |
ttttcatttagaggatcatgcactacaaatcctcacgggtcttaatgatcaattttccatcgttcaaacacaannnnnnncatggaacctttatcatgtc |
370 |
Q |
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| T |
1659064 |
ttttcatttagaggatcatgcactacaaatcctcacgggtcttaatgatcaattttccgtcgttcaaacacaatttttttcatggaacctttatcatgtc |
1659163 |
T |
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| Q |
371 |
gtaat |
375 |
Q |
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||||| |
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| T |
1659164 |
gtaat |
1659168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 1654385 - 1654554
Alignment:
| Q |
1 |
atcgtgaactcggttagttctcagattgttcagtcttatttaataagaatgttgttgatgtttggaaagagttaaaggaacaattttccatgtttgatca |
100 |
Q |
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| T |
1654385 |
atcgtgaactcggttagttctcagattgttcagtcttatttattaagaatgttgttgatgtttggaaagagttaaaggaacaattttccaagtttgatca |
1654484 |
T |
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| Q |
101 |
cattcatgttgctaatccatcatcaatcctttgaaacaaggttcactttccgttaccgattacttcattg |
170 |
Q |
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| T |
1654485 |
cattcatgttgctaatccatcatcaattctttgaaacaaggttcactttccgttactgattacttcattg |
1654554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 37 - 343
Target Start/End: Original strand, 28062226 - 28062543
Alignment:
| Q |
37 |
tatttaataagaatgttgttgatgtttggaaagagttaaaggaacaattttccatgtttgatcacattcatgttgctaa-------tccatcatcaatcc |
129 |
Q |
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| T |
28062226 |
tatttatttagaatgttgttgatgtttggaaagaattgaagagacaattttccaagtctgatcacattcgtattgctaagcttcgttccagcatcaattc |
28062325 |
T |
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| Q |
130 |
tttgaaa-caaggttcactttccgttaccgattacttcattgagttaaagattatttgggacgaattagagagttattgtcatctccctacttgtacgtg |
228 |
Q |
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||||||| ||||||||||| | ||||| |||||||||| | | || |||||| |||| |||||||| ||||||||| || ||| ||||| |||||||| |
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| T |
28062326 |
tttgaaaacaaggttcactatatgttactgattacttcactaaattgaagattctttgagacgaattggagagttatcatcctcttcctacatgtacgtg |
28062425 |
T |
|
| Q |
229 |
ccatcatcagtgccaatgtttagctatgcataatcctaaggattttcatttagaggatcatgcact---acaaatcctcacgggtcttaatgatcaattt |
325 |
Q |
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||| ||||||||||||||||||| ||| |||| |||||| ||| |||||||||| | ||| |||| | ||||| || ||||||||||||||| |
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| T |
28062426 |
tcattatcagtgccaatgtttagccatgagtaatggtaaggacttttggttagaggatccagtactgccacaatttctcacaggccttaatgatcaattt |
28062525 |
T |
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| Q |
326 |
tccatcgttcaaacacaa |
343 |
Q |
| |
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|| || ||||| |||||| |
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| T |
28062526 |
tcaattgttcagacacaa |
28062543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 37 - 343
Target Start/End: Original strand, 28072651 - 28072968
Alignment:
| Q |
37 |
tatttaataagaatgttgttgatgtttggaaagagttaaaggaacaattttccatgtttgatcacattcatgttgctaa-------tccatcatcaatcc |
129 |
Q |
| |
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|||||| | ||||||||||||||||||||||||| || ||| ||||||||||| || ||||||||||| | ||||||| |||| ||||||| | |
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| T |
28072651 |
tatttatttagaatgttgttgatgtttggaaagaattgaagagacaattttccaagtctgatcacattcgtattgctaagcttcgttccagcatcaattc |
28072750 |
T |
|
| Q |
130 |
tttgaaa-caaggttcactttccgttaccgattacttcattgagttaaagattatttgggacgaattagagagttattgtcatctccctacttgtacgtg |
228 |
Q |
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| T |
28072751 |
tttgaaaacaaggttcactatatgttactgattacttcactaaattgaagattctttgagacgaattggagagttatcatcctcttcctacatgtacgtg |
28072850 |
T |
|
| Q |
229 |
ccatcatcagtgccaatgtttagctatgcataatcctaaggattttcatttagaggatcatgcact---acaaatcctcacgggtcttaatgatcaattt |
325 |
Q |
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||| ||||||||||||||||||| ||| |||| |||||| ||| |||||||||| | ||| |||| | ||||| || ||||||||||||||| |
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| T |
28072851 |
tcattatcagtgccaatgtttagccatgagtaatggtaaggacttttggttagaggatccagtactgccacaatttctcacaggccttaatgatcaattt |
28072950 |
T |
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| Q |
326 |
tccatcgttcaaacacaa |
343 |
Q |
| |
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|| || ||||| |||||| |
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| T |
28072951 |
tcaattgttcagacacaa |
28072968 |
T |
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