View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_23 (Length: 384)
Name: NF8508_low_23
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 21683433 - 21683082
Alignment:
| Q |
17 |
acatcaaaggatacaatttggccaacacatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaaggtctgtgatagaagcaa |
116 |
Q |
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| T |
21683433 |
acattaaaggatacaatttggccaacacatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaaggtctgtgatagaagcaa |
21683334 |
T |
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| Q |
117 |
tgccaactccaacaagtaagaagaatagagagagtttaatattccggctgcacatagtagtaaaataattcacaatcagattaagcaatttagcatgacc |
216 |
Q |
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| T |
21683333 |
tgccaactccaacaagtaagaagaatagagagagtttaatattccggctgcacatagtagtaaattaattcacaatcagattaagcaatttagcatgacc |
21683234 |
T |
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| Q |
217 |
atggtcagatttaatttcaatatcactaggaggggtctcatgactaatttgttacctgaactgcttctttaggaaaagggtttctagcataactgtgaat |
316 |
Q |
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| T |
21683233 |
atggtcagatttaatttcaatatcactaggaggggtctcatgactaatttgttacctgaactgcttctttaggaaaagggtttctagcataactgtgaat |
21683134 |
T |
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| Q |
317 |
ggtatgattgcaagttttgtcatctacaaaattaacattaaaatcaatatat |
368 |
Q |
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| T |
21683133 |
ggtatgattgcaagttttgtcatctacaaaattaacattaaaatcaatatat |
21683082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 40412004 - 40412150
Alignment:
| Q |
22 |
aaaggatacaatttggccaacacatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaaggtctgtgatagaagcaatgcca |
121 |
Q |
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| T |
40412004 |
aaaggatacaatttggctaacacatgttgttatgattgctagaagggaaataatggttcccacaaaattgagttgaagatcagtgatagaggcaacacca |
40412103 |
T |
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| Q |
122 |
actccaacaagtaagaagaatagagagagtttaatattccggctgca |
168 |
Q |
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| T |
40412104 |
actccaacaagtaataggaatagagtgaattttattttctggctgca |
40412150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 40412240 - 40412319
Alignment:
| Q |
268 |
ttacctgaactgcttctttaggaaaagggtttctagcataactgtgaatggtatgattgcaagttttgtcatctacaaaa |
347 |
Q |
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| T |
40412240 |
ttacctgaattgtttctttaggaaaatggtttctaacattactgtgaatggtatgatcgcaagttttgtcatctgcaaaa |
40412319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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