View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_27 (Length: 360)
Name: NF8508_low_27
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 53657450 - 53657803
Alignment:
| Q |
1 |
agaaccgaaaattcgagaagactattcgttacgcttcacgaaaagcttatgcagaaacccggcctagaattaaaggccggttcgctaaacgaaccgaaat |
100 |
Q |
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| T |
53657450 |
agaaccgaaaattcgagaagactattcgttacgcttcacgaaaagcttatgcagaaacccggcctagaattaaaggccggttcgctaaacgaaccgaaat |
53657549 |
T |
|
| Q |
101 |
tgactcggatgtggaccgtctctataaccctgctgatcctctctcagttccttcatctatgctaatggactgtccatacggcgtcgttcccacgttttag |
200 |
Q |
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| T |
53657550 |
tgactcggatgtggaccgtctctataaccctgctgatcctctctcagttccttcatctatgctaatggactgtccatacggcgtcgttcccacgttttag |
53657649 |
T |
|
| Q |
201 |
taaacaaggataacagaggagtatgaatctcctat-----------aatgtgttagaataattagtgatgatgattctgtgggaaccgttgattattttg |
289 |
Q |
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| T |
53657650 |
taaacaaggataacagaggagtatgattctcctatactatggtttcaatgtgttagaataattagtgatgatgattctgtgggaaccgttgattattttg |
53657749 |
T |
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| Q |
290 |
tttttattgctaattaaaagttcagataagttgagtccctcagatacatcaatg |
343 |
Q |
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| T |
53657750 |
tttttattgctaattaaaagttcagataagttgagtccctcagatacatcaatg |
53657803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 3419991 - 3419926
Alignment:
| Q |
11 |
attcgagaagactattcgttacgcttcacgaaaagcttatgcagaaacccggcctagaattaaagg |
76 |
Q |
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| T |
3419991 |
attcgagaagactattcgctacgcttcgagaaaagcttatgcagaaactagacctagaattaaagg |
3419926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48759509 - 48759584
Alignment:
| Q |
1 |
agaaccgaaaattcgagaagactattcgttacgcttcacgaaaagcttatgcagaaacccggcctagaattaaagg |
76 |
Q |
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|||| |||| |||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||||| |||||||| |
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| T |
48759509 |
agaatcgaagattcgagaagacaattcgttatgcttctcgtaaagcttatgcggaaactaggcctaggattaaagg |
48759584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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