View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_29 (Length: 355)
Name: NF8508_low_29
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_29 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 44145135 - 44145489
Alignment:
| Q |
1 |
gtggaaatcttgcatctgaacccattgcaaacaccatatcaaggccagagattcagccatcagaggagatagtgtaatctcttccttccttgtagctgcg |
100 |
Q |
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| T |
44145135 |
gtggaaatcttgcatctaaacccgttgcaaacaccatatcaaggctagggattcaaccatcagaggagatagtgtaatatcttccttccttgtagctgcg |
44145234 |
T |
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| Q |
101 |
aaggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggta |
200 |
Q |
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| T |
44145235 |
aaggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggta |
44145334 |
T |
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| Q |
201 |
gagtaatggagtagccacatttggacagagtgtttccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatattcatgtctggt |
300 |
Q |
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| T |
44145335 |
gagtaatggagtagccacatttggacagagtgtttccagttttacaccctttcttgctagattaattcagtcaggactcgggaagatattcatgtctggt |
44145434 |
T |
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| Q |
301 |
atctaaaggaaattcgtcacactattaagtacagtggctctccacacttccttcc |
355 |
Q |
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| T |
44145435 |
atctaaaggaaattcgtcacactattaagtacagtggctctccacacttccttcc |
44145489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 44156610 - 44156483
Alignment:
| Q |
221 |
ttggacagagtgtttccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcac |
320 |
Q |
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| T |
44156610 |
ttggacaaagtgtttccaattttacaacctttctttctagattaatttggtc-------gggaatatatttatgtctggtatctaaaggaaattcgtcac |
44156518 |
T |
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| Q |
321 |
actattaagtacagtggctctccacacttccttcc |
355 |
Q |
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| T |
44156517 |
actattaagtacagtggctctccacacttccttcc |
44156483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 44158281 - 44158099
Alignment:
| Q |
25 |
ttgcaaacaccatatcaaggccagagattcagccatcagaggagatagtgtaatc---tc--ttccttccttgtagctgcgaa-ggccacagaacctgca |
118 |
Q |
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| T |
44158281 |
ttgcaaacaccgtgtcaaggccagtgcttcagccatcaaaggagatattgcgatcgtttcgtttccttccttgtagccgcaaaaggtcacaggacctaca |
44158182 |
T |
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| Q |
119 |
taactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtaga |
202 |
Q |
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| T |
44158181 |
aagttgcgcac-acaaaaccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagcctatgtacaggtaga |
44158099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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