View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_3 (Length: 613)
Name: NF8508_low_3
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 26 - 411
Target Start/End: Complemental strand, 43361228 - 43360841
Alignment:
| Q |
26 |
gaaaatggactgaaatgaataattggtgaactatttaatttaacttaattctaaaaaagttacagcatattgttagctttcaaaatcatgtatgtttatg |
125 |
Q |
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| T |
43361228 |
gaaaaaggcctgaaatgaataattggtgaactatttaatttaacttaattctaaaaaagttacagcatattgttagctttcaaaatcatgtatatttatg |
43361129 |
T |
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| Q |
126 |
tcat--tgttaactacttcttcagttgccaacaagtgagcaataatgcataaagcaaagatcaaatgtggtaatttccactctatgtttaactaacacaa |
223 |
Q |
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| T |
43361128 |
tcatattgttaactacttcttcagttgccaacaagtgagcaataatacataaagcaaagatcaaatgtggtaatttccactctatgtttaactaacacaa |
43361029 |
T |
|
| Q |
224 |
tcatggctcaaatacttcgaggtaaatcacagcttgaatatcaatacacaacaattaacactattnnnnnnntacaacatcaccttcgaaaggacatgac |
323 |
Q |
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| T |
43361028 |
tcatggctcaaatacttcgaggtaaatcacagcttgaatatcaatacacaacaaataacactattaaaaaaatacaacatcaccttcgaaaggacatgac |
43360929 |
T |
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| Q |
324 |
atgttagagtactgcaagttttcctccaatgacaatagtagcagctttatagaattgcatgttaaacagtaacagttagaataagata |
411 |
Q |
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| T |
43360928 |
atgttagagtactgcaagttttcctccaatgacaatagtagcagctttatagaattgcatgttaaacagtaacagttagaataagata |
43360841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 432 - 613
Target Start/End: Complemental strand, 43360844 - 43360663
Alignment:
| Q |
432 |
gatatttggccaagttcaagtgagcttgacatttacagtttttatttttcacgaaattgtttgaagaggaaacatgacagtgcaaacatgcaatataaaa |
531 |
Q |
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| T |
43360844 |
gatatttggccaagttcaagtgagcttgacatttacagcttttatttttcacgaaattgtttgaagaggaaacatgacagtgcaaacatgcaatataaaa |
43360745 |
T |
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| Q |
532 |
aatctcaagtgttagcaaaagaaatgttatcctcttgaaatttgaaactataaaccatcacagagcagaagtcaccgtaacc |
613 |
Q |
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| T |
43360744 |
aatctcaagtgttagcaaaagaaatgttatcctcttgaaatttgaaactataaaccatcacagagcagaagtcaccgtaacc |
43360663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 550
Target Start/End: Original strand, 49414351 - 49414504
Alignment:
| Q |
410 |
tacttgctaaaggctaacaattgatatttggccaagttcaagtgagcttgacatttacagtttttattt-ttcacgaaattgtttg------------aa |
496 |
Q |
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| T |
49414351 |
tacttgctaaaggctaaagattgatatttggctaagttcaagtgagcttgatatttatgggttttatttatttacaaaattctttgcttgacagcatcaa |
49414450 |
T |
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| Q |
497 |
gaggaaacatgacagtgcaaacatgcaatataaaaaatctcaagtgttagcaaa |
550 |
Q |
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| T |
49414451 |
gatgaaatatgacagtgcaaatgtgcaatgtaaaaaatcttaagtgttagcaaa |
49414504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 49414126 - 49414301
Alignment:
| Q |
194 |
taatttccactctatgtttaactaac--aca-atcatggctcaaatacttcgaggtaaatcacagcttgaatatcaatacacaacaattaacactattnn |
290 |
Q |
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| T |
49414126 |
taatttccactctatgtcgaactaattaacacatcatgtctcaaatactttgaagtaaatcacagcttgaatatcattacacaacaa----caatattca |
49414221 |
T |
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| Q |
291 |
nnnnntacaacatcaccttcgaaaggacat--gacatgttagagtactgcaagttttcctccaatgacaatagtagcagct |
369 |
Q |
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| T |
49414222 |
atta-tacaacatcaccacctaaaggacatatgacatgttagggtactacaaactttcttccaatgacaatagtagtagct |
49414301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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